Final CIPRES Annual Meeting - July 22-23
The final CIPRES All Hands Meeting took place at the University of California, Berkeley on July 22-23, 2009. This meeting was open to the public. We welcomed all interested members of the community. The group presented results and discussed ongoing research projects. A poster session has held on July 23.
The schedule, a presentations are presented below.
Schedule: [pdf]
July 22, 2009 |
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Short presentations on CIPRES products: |
306 Soda Hall |
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9:00-9:30 |
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Introductions |
Tandy Warnow, Bernard Moret |
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9:30-9:45 |
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Software overview |
Mark Holder [pdf] |
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9:45-10:00 |
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TreeBASE II: |
Val Tannen |
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10:00-10:15 |
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CIPRES Portal |
Mark Miller [ppt] |
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10:15-10:30 |
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RNASim |
Junhyong Kim/Stephen Fisher [ppt] |
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10:30-10:45 |
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Break |
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10:45-11:00 |
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POY |
Andres Varon |
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11:00-11:15 |
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Outreach |
Brent Mishler [ppt] |
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11:15-11:30 |
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Mathematical Research |
Satish Rao |
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11:30-12:00 |
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Discussion |
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12:00-1:30 |
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Lunch break |
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1:30-2:30 |
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Software Advances |
Mark Holder, Rutger Vos, Kevin Liu, Tandy Warnow |
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2:30 - 3:30 |
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Software Demos: RNASim, CIPRES Portal, TreeBASE II, and Indel Seq-Gen. |
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3:30 - 4:30 |
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Group discussion |
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5:00 - 7:00 |
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Reception (hosted by the University and Jepson Herbaria) |
1001 Valley Life Sciences Building (double glass doors off the atrium containing the T.rex skeleton in the center of the first floor) |
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July 23, 2009 |
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Short presentations relevant to the CIPRES project, many of which resulted from CIPRES funding. |
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9:00 -12:30 |
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Research talks |
Room 306 Soda Hall |
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9:00-9:45 |
Alignment and Markers |
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Speakers: |
Sandi Willows-Munro, UT-Austin |
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Li-San Wang, UPenn |
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Serita Nelesen, UT-Austin |
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9:45-10:30 |
Mathematical Phylogenetics: |
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Speakers: |
Sebastien Roch, Microsoft and UCLA |
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Erick Matsen, UC Berkeley |
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Satish Rao, UC Berkeley |
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10:30-10:45 |
Break |
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10:45-11:30 |
Phylogenetic Networks |
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Speakers: |
Monique Morin, UNM |
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Luay Nakhleh, Rice |
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Daniel Huson, Tuebingen |
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11:30-11:45 |
Break |
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11:45-12:15 |
Genome Rearrangement Phylogeny |
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Speakers |
Jijun Tang, Univ. South Carolina |
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Bernard Moret, EPFL |
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12:30-2:00 |
Poster Session and Lunch (poster list here) |
Wozniak Lounge, 430-8 Soda Hall. |
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2:00 |
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Meeting adjourns |
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We hope to see you there!
