BOOTSTRAP-RAxML is run by a pre-created XML file in the CIPRES Portal:

XML command file structure for BOOTSTRAP-RAxML is below

<?xml version="1.0" encoding="UTF-8"?>
<command-object>
<!--This file is automatically generated. Please do not update it manually!-->
<command-target />
<commands>[-DbaseSubsModel=GAMMA, -DbootSeed=12345, -DparsimonySeed=12345, -DnumRuns=100]</commands>
<part-file><!-- the alignment file is optional --></part-file>
</command-object>

   

 

CIPRES is a Collaboration of the Following Institutions:
American Museum of Natural History, Florida State University, New Jersey Institute of Technology, North Carolina State University, Rice University, San Diego Supercomputer Center, Texas A&M, University of Arizona, University of British Columbia, University of California at Berkeley, University of California at San Diego, University of Connecticut, University of Pennsylvania, Univ. of South Carolina, University of Texas at Austin, and Yale University. xhtml | css