<?xml version="1.0" encoding="UTF-8" standalone="no"?><beast beautitemplate='Standard' beautistatus='' namespace="beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.base.evolution.alignment:beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.tree.coalescent:beast.pkgmgmt:beast.base.core:beast.base.inference.util:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.evolution.substitutionmodel:beast.base.evolution.likelihood" required="BEAST.base v2.7.4" version="2.7">

    <data
id="primate-mtDNA"
spec="Alignment">
        <sequence id="seq_Lemur_catta" spec="Sequence" taxon="Lemur_catta" totalcount="4" value="AAGCTTCATAGGAGCAACCATTCTAATAATCGCACATGGCCTTACATCATCCATATTATTCTGTCTAGCCAACTCTAACTACGAACGAATCCATAGCCGTACAATACTACTAGCACGAGGGATCCAAACCATTCTCCCTCTTATAGCCACCTGATGACTACTCGCCAGCCTAACTAACCTAGCCCTACCCACCTCTATCAATTTAATTGGCGAACTATTCGTCACTATAGCATCCTTCTCATGATCAAACATTACAATTATCTTAATAGGCTTAAATATGCTCATCACCGCTCTCTATTCCCTCTATATATTAACTACTACACAACGAGGAAAACTCACATATCATTCGCACAACCTAAACCCATCCTTTACACGAGAAAACACCCTTATATCCATACACATACTCCCCCTTCTCCTATTTACCTTAAACCCCAAAATTATTCTAGGACCCACGTACTGTAAATATAGTTTAAA-AAAACACTAGATTGTGAATCCAGAAATAGAAGCTCAAAC-CTTCTTATTTACCGAGAAAGTAATGTATGAACTGCTAACTCTGCACTCCGTATATAAAAATACGGCTATCTCAACTTTTAAAGGATAGAAGTAATCCATTGGCCTTAGGAGCCAAAAA-ATTGGTGCAACTCCAAATAAAAGTAATAAATCTATTATCCTCTTTCACCCTTGTCACACTGATTATCCTAACTTTACCTATCATTATAAACGTTACAAACATATACAAAAACTACCCCTATGCACCATACGTAAAATCTTCTATTGCATGTGCCTTCATCACTAGCCTCATCCCAACTATATTATTTATCTCCTCAGGACAAGAAACAATCATTTCCAACTGACATTGAATAACAATCCAAACCCTAAAACTATCTATTAGCTT"/>
        <sequence id="seq_Homo_sapiens" spec="Sequence" taxon="Homo_sapiens" totalcount="4" value="AAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGGCTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTGACAACAGAGGCTTA-CGACCCCTTATTTACCGAGAAAGCT-CACAAGAACTGCTAACTCATGCCCCCATGTCTAACAACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGCCCCAAAAATTTTGGTGCAACTCCAAATAAAAGTAATAACCATGCACACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCACCCTCGTTAACCCTAACAAAAAAAACTCATACCCCCATTATGTAAAATCCATTGTCGCATCCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCACAACCCAAACAACCCAGCTCTCCCTAAGCTT"/>
        <sequence id="seq_Pan" spec="Sequence" taxon="Pan" totalcount="4" value="AAGCTTCACCGGCGCAATTATCCTCATAATCGCCCACGGACTTACATCCTCATTATTATTCTGCCTAGCAAACTCAAATTATGAACGCACCCACAGTCGCATCATAATTCTCTCCCAAGGACTTCAAACTCTACTCCCACTAATAGCCTTTTGATGACTCCTAGCAAGCCTCGCTAACCTCGCCCTACCCCCTACCATTAATCTCCTAGGGGAACTCTCCGTGCTAGTAACCTCATTCTCCTGATCAAATACCACTCTCCTACTCACAGGATTCAACATACTAATCACAGCCCTGTACTCCCTCTACATGTTTACCACAACACAATGAGGCTCACTCACCCACCACATTAATAACATAAAGCCCTCATTCACACGAGAAAATACTCTCATATTTTTACACCTATCCCCCATCCTCCTTCTATCCCTCAATCCTGATATCATCACTGGATTCACCTCCTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTGACAACAGAGGCTCA-CGACCCCTTATTTACCGAGAAAGCT-TATAAGAACTGCTAATTCATATCCCCATGCCTGACAACATGGCTTTCTCAACTTTTAAAGGATAACAGCCATCCGTTGGTCTTAGGCCCCAAAAATTTTGGTGCAACTCCAAATAAAAGTAATAACCATGTATACTACCATAACCACCTTAACCCTAACTCCCTTAATTCTCCCCATCCTCACCACCCTCATTAACCCTAACAAAAAAAACTCATATCCCCATTATGTGAAATCCATTATCGCGTCCACCTTTATCATTAGCCTTTTCCCCACAACAATATTCATATGCCTAGACCAAGAAGCTATTATCTCAAACTGGCACTGAGCAACAACCCAAACAACCCAGCTCTCCCTAAGCTT"/>
        <sequence id="seq_Gorilla" spec="Sequence" taxon="Gorilla" totalcount="4" value="AAGCTTCACCGGCGCAGTTGTTCTTATAATTGCCCACGGACTTACATCATCATTATTATTCTGCCTAGCAAACTCAAACTACGAACGAACCCACAGCCGCATCATAATTCTCTCTCAAGGACTCCAAACCCTACTCCCACTAATAGCCCTTTGATGACTTCTGGCAAGCCTCGCCAACCTCGCCTTACCCCCCACCATTAACCTACTAGGAGAGCTCTCCGTACTAGTAACCACATTCTCCTGATCAAACACCACCCTTTTACTTACAGGATCTAACATACTAATTACAGCCCTGTACTCCCTTTATATATTTACCACAACACAATGAGGCCCACTCACACACCACATCACCAACATAAAACCCTCATTTACACGAGAAAACATCCTCATATTCATGCACCTATCCCCCATCCTCCTCCTATCCCTCAACCCCGATATTATCACCGGGTTCACCTCCTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTGATAACAGAGGCTCA-CAACCCCTTATTTACCGAGAAAGCT-CGTAAGAGCTGCTAACTCATACCCCCGTGCTTGACAACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGACCCAAAAATTTTGGTGCAACTCCAAATAAAAGTAATAACTATGTACGCTACCATAACCACCTTAGCCCTAACTTCCTTAATTCCCCCTATCCTTACCACCTTCATCAATCCTAACAAAAAAAGCTCATACCCCCATTACGTAAAATCTATCGTCGCATCCACCTTTATCATCAGCCTCTTCCCCACAACAATATTTCTATGCCTAGACCAAGAAGCTATTATCTCAAGCTGACACTGAGCAACAACCCAAACAATTCAACTCTCCCTAAGCTT"/>
        <sequence id="seq_Pongo" spec="Sequence" taxon="Pongo" totalcount="4" value="AAGCTTCACCGGCGCAACCACCCTCATGATTGCCCATGGACTCACATCCTCCCTACTGTTCTGCCTAGCAAACTCAAACTACGAACGAACCCACAGCCGCATCATAATCCTCTCTCAAGGCCTTCAAACTCTACTCCCCCTAATAGCCCTCTGATGACTTCTAGCAAGCCTCACTAACCTTGCCCTACCACCCACCATCAACCTTCTAGGAGAACTCTCCGTACTAATAGCCATATTCTCTTGATCTAACATCACCATCCTACTAACAGGACTCAACATACTAATCACAACCCTATACTCTCTCTATATATTCACCACAACACAACGAGGTACACCCACACACCACATCAACAACATAAAACCTTCTTTCACACGCGAAAATACCCTCATGCTCATACACCTATCCCCCATCCTCCTCTTATCCCTCAACCCCAGCATCATCGCTGGGTTCGCCTACTGTAAATATAGTTTAACCAAAACATTAGATTGTGAATCTAATAATAGGGCCCCA-CAACCCCTTATTTACCGAGAAAGCT-CACAAGAACTGCTAACTCTCACT-CCATGTGTGACAACATGGCTTTCTCAGCTTTTAAAGGATAACAGCTATCCCTTGGTCTTAGGATCCAAAAATTTTGGTGCAACTCCAAATAAAAGTAACAGCCATGTTTACCACCATAACTGCCCTCACCTTAACTTCCCTAATCCCCCCCATTACCGCTACCCTCATTAACCCCAACAAAAAAAACCCATACCCCCACTATGTAAAAACGGCCATCGCATCCGCCTTTACTATCAGCCTTATCCCAACAACAATATTTATCTGCCTAGGACAAGAAACCATCGTCACAAACTGATGCTGAACAACCACCCAGACACTACAACTCTCACTAAGCTT"/>
        <sequence id="seq_Hylobates" spec="Sequence" taxon="Hylobates" totalcount="4" value="AAGCTTTACAGGTGCAACCGTCCTCATAATCGCCCACGGACTAACCTCTTCCCTGCTATTCTGCCTTGCAAACTCAAACTACGAACGAACTCACAGCCGCATCATAATCCTATCTCGAGGGCTCCAAGCCTTACTCCCACTGATAGCCTTCTGATGACTCGCAGCAAGCCTCGCTAACCTCGCCCTACCCCCCACTATTAACCTCCTAGGTGAACTCTTCGTACTAATGGCCTCCTTCTCCTGGGCAAACACTACTATTACACTCACCGGGCTCAACGTACTAATCACGGCCCTATACTCCCTTTACATATTTATCATAACACAACGAGGCACACTTACACACCACATTAAAAACATAAAACCCTCACTCACACGAGAAAACATATTAATACTTATGCACCTCTTCCCCCTCCTCCTCCTAACCCTCAACCCTAACATCATTACTGGCTTTACTCCCTGTAAACATAGTTTAATCAAAACATTAGATTGTGAATCTAACAATAGAGGCTCG-AAACCTCTTGCTTACCGAGAAAGCC-CACAAGAACTGCTAACTCACTATCCCATGTATGACAACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGACCCAAAAATTTTGGTGCAACTCCAAATAAAAGTAATAGCAATGTACACCACCATAGCCATTCTAACGCTAACCTCCCTAATTCCCCCCATTACAGCCACCCTTATTAACCCCAATAAAAAGAACTTATACCCGCACTACGTAAAAATGACCATTGCCTCTACCTTTATAATCAGCCTATTTCCCACAATAATATTCATGTGCACAGACCAAGAAACCATTATTTCAAACTGACACTGAACTGCAACCCAAACGCTAGAACTCTCCCTAAGCTT"/>
        <sequence id="seq_Macaca_fuscata" spec="Sequence" taxon="Macaca_fuscata" totalcount="4" value="AAGCTTTTCCGGCGCAACCATCCTTATGATCGCTCACGGACTCACCTCTTCCATATATTTCTGCCTAGCCAATTCAAACTATGAACGCACTCACAACCGTACCATACTACTGTCCCGAGGACTTCAAATCCTACTTCCACTAACAGCCTTTTGATGATTAACAGCAAGCCTTACTAACCTTGCCCTACCCCCCACTATCAATCTACTAGGTGAACTCTTTGTAATCGCAACCTCATTCTCCTGATCCCATATCACCATTATGCTAACAGGACTTAACATATTAATTACGGCCCTCTACTCTCTCCACATATTCACTACAACACAACGAGGAACACTCACACATCACATAATCAACATAAAGCCCCCCTTCACACGAGAAAACACATTAATATTCATACACCTCGCTCCAATTATCCTTCTATCCCTCAACCCCAACATCATCCTGGGGTTTACCTCCTGTAGATATAGTTTAACTAAAACACTAGATTGTGAATCTAACCATAGAGACTCA-CCACCTCTTATTTACCGAGAAAACT-CGCAAGGACTGCTAACCCATGTACCCGTACCTAAAATTACGGTTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGACCTTAGGAGTCAAAAACATTGGTGCAACTCCAAATAAAAGTAATAATCATGCACACCCCCATCATTATAACAACCCTTATCTCCCTAACTCTCCCAATTTTTGCCACCCTCATCAACCCTTACAAAAAACGTCCATACCCAGATTACGTAAAAACAACCGTAATATATGCTTTCATCATCAGCCTCCCCTCAACAACTTTATTCATCTTCTCAAACCAAGAAACAACCATTTGGAGCTGACATTGAATAATGACCCAAACACTAGACCTAACGCTAAGCTT"/>
        <sequence id="seq_M._mulatta" spec="Sequence" taxon="M._mulatta" totalcount="4" value="AAGCTTTTCTGGCGCAACCATCCTCATGATTGCTCACGGACTCACCTCTTCCATATATTTCTGCCTAGCCAATTCAAACTATGAACGCACTCACAACCGTACCATACTACTGTCCCGGGGACTTCAAATCCTACTTCCACTAACAGCTTTCTGATGATTAACAGCAAGCCTTACTAACCTTGCCCTACCCCCCACTATCAACCTACTAGGTGAACTCTTTGTAATCGCGACCTCATTCTCCTGGTCCCATATCACCATTATATTAACAGGATTTAACATACTAATTACGGCCCTCTACTCCCTCCACATATTCACCACAACACAACGAGGAGCACTCACACATCACATAATCAACATAAAACCCCCCTTCACACGAGAAAACATATTAATATTCATACACCTCGCTCCAATCATCCTCCTATCTCTCAACCCCAACATCATCCTGGGGTTTACTTCCTGTAGATATAGTTTAACTAAAACATTAGATTGTGAATCTAACCATAGAGACTTA-CCACCTCTTATTTACCGAGAAAACT-CGCGAGGACTGCTAACCCATGTATCCGTACCTAAAATTACGGTTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGACCTTAGGAGTCAAAAATATTGGTGCAACTCCAAATAAAAGTAATAATCATGCACACCCCTATCATAATAACAACCCTTATCTCCCTAACTCTCCCAATTTTTGCCACCCTCATCAACCCTTACAAAAAACGTCCATACCCAGATTACGTAAAAACAACCGTAATATATGCTTTCATCATCAGCCTCCCCTCAACAACTTTATTCATCTTCTCAAACCAAGAAACAACCATTTGAAGCTGACATTGAATAATAACCCAAACACTAGACCTAACACTAAGCTT"/>
        <sequence id="seq_M._fascicularis" spec="Sequence" taxon="M._fascicularis" totalcount="4" value="AAGCTTCTCCGGCGCAACCACCCTTATAATCGCCCACGGGCTCACCTCTTCCATGTATTTCTGCTTGGCCAATTCAAACTATGAGCGCACTCATAACCGTACCATACTACTATCCCGAGGACTTCAAATTCTACTTCCATTGACAGCCTTCTGATGACTCACAGCAAGCCTTACTAACCTTGCCCTACCCCCCACTATTAATCTACTAGGCGAACTCTTTGTAATCACAACTTCATTTTCCTGATCCCATATCACCATTGTGTTAACGGGCCTTAATATACTAATCACAGCCCTCTACTCTCTCCACATGTTCATTACAGTACAACGAGGAACACTCACACACCACATAATCAATATAAAACCCCCCTTCACACGAGAAAACATATTAATATTCATACACCTCGCTCCAATTATCCTTCTATCTCTCAACCCCAACATCATCCTGGGGTTTACCTCCTGTAAATATAGTTTAACTAAAACATTAGATTGTGAATCTAACTATAGAGGCCTA-CCACTTCTTATTTACCGAGAAAACT-CGCAAGGACTGCTAATCCATGCCTCCGTACTTAAAACTACGGTTTCCTCAACTTTTAAAGGATAACAGCTATCCATTGACCTTAGGAGTCAAAAACATTGGTGCAACTCCAAATAAAAGTAATAATCATGCACACCCCCATCATAATAACAACCCTCATCTCCCTGACCCTTCCAATTTTTGCCACCCTCACCAACCCCTATAAAAAACGTTCATACCCAGACTACGTAAAAACAACCGTAATATATGCTTTTATTACCAGTCTCCCCTCAACAACCCTATTCATCCTCTCAAACCAAGAAACAACCATTTGGAGTTGACATTGAATAACAACCCAAACATTAGACCTAACACTAAGCTT"/>
        <sequence id="seq_M._sylvanus" spec="Sequence" taxon="M._sylvanus" totalcount="4" value="AAGCTTCTCCGGTGCAACTATCCTTATAGTTGCCCATGGACTCACCTCTTCCATATACTTCTGCTTGGCCAACTCAAACTACGAACGCACCCACAGCCGCATCATACTACTATCCCGAGGACTCCAAATCCTACTCCCACTAACAGCCTTCTGATGATTCACAGCAAGCCTTACTAATCTTGCTCTACCCTCCACTATTAATCTACTGGGCGAACTCTTCGTAATCGCAACCTCATTTTCCTGATCCCACATCACCATCATACTAACAGGACTGAACATACTAATTACAGCCCTCTACTCTCTTCACATATTCACCACAACACAACGAGGAGCGCTCACACACCACATAATTAACATAAAACCACCTTTCACACGAGAAAACATATTAATACTCATACACCTCGCTCCAATTATTCTTCTATCTCTTAACCCCAACATCATTCTAGGATTTACTTCCTGTAAATATAGTTTAATTAAAACATTAGACTGTGAATCTAACTATAGAAGCTTA-CCACTTCTTATTTACCGAGAAAACT-TGCAAGGACCGCTAATCCACACCTCCGTACTTAAAACTACGGTTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGCCTTAGGAGTCAAAAATATTGGTGCAACTCCAAATAAAAGTAATAATCATGTATACCCCCATCATAATAACAACTCTCATCTCCCTAACTCTTCCAATTTTCGCTACCCTTATCAACCCCAACAAAAAACACCTATATCCAAACTACGTAAAAACAGCCGTAATATATGCTTTCATTACCAGCCTCTCTTCAACAACTTTATATATATTCTTAAACCAAGAAACAATCATCTGAAGCTGGCACTGAATAATAACCCAAACACTAAGCCTAACATTAAGCTT"/>
        <sequence id="seq_Saimiri_sciureus" spec="Sequence" taxon="Saimiri_sciureus" totalcount="4" value="AAGCTTCACCGGCGCAATGATCCTAATAATCGCTCACGGGTTTACTTCGTCTATGCTATTCTGCCTAGCAAACTCAAATTACGAACGAATTCACAGCCGAACAATAACATTTACTCGAGGGCTCCAAACACTATTCCCGCTTATAGGCCTCTGATGACTCCTAGCAAATCTCGCTAACCTCGCCCTACCCACAGCTATTAATCTAGTAGGAGAATTACTCACAATCGTATCTTCCTTCTCTTGATCCAACTTTACTATTATATTCACAGGACTTAATATACTAATTACAGCACTCTACTCACTTCATATGTATGCCTCTACACAGCGAGGTCCACTTACATACAGCACCAGCAATATAAAACCAATATTTACACGAGAAAATACGCTAATATTTATACATATAACACCAATCCTCCTCCTTACCTTGAGCCCCAAGGTAATTATAGGACCCTCACCTTGTAATTATAGTTTAGCTAAAACATTAGATTGTGAATCTAATAATAGAAGAATA-TAACTTCTTAATTACCGAGAAAGTG-CGCAAGAACTGCTAATTCATGCTCCCAAGACTAACAACTTGGCTTCCTCAACTTTTAAAGGATAGTAGTTATCCATTGGTCTTAGGAGCCAAAAACATTGGTGCAACTCCAAATAAAAGTAATA---ATACACTTCTCCATCACTCTAATAACACTAATTAGCCTACTAGCGCCAATCCTAGCTACCCTCATTAACCCTAACAAAAGCACACTATACCCGTACTACGTAAAACTAGCCATCATCTACGCCCTCATTACCAGTACCTTATCTATAATATTCTTTATCCTTACAGGCCAAGAATCAATAATTTCAAACTGACACTGAATAACTATCCAAACCATCAAACTATCCCTAAGCTT"/>
        <sequence id="seq_Tarsius_syrichta" spec="Sequence" taxon="Tarsius_syrichta" totalcount="4" value="AAGTTTCATTGGAGCCACCACTCTTATAATTGCCCATGGCCTCACCTCCTCCCTATTATTTTGCCTAGCAAATACAAACTACGAACGAGTCCACAGTCGAACAATAGCACTAGCCCGTGGCCTTCAAACCCTATTACCTCTTGCAGCAACATGATGACTCCTCGCCAGCTTAACCAACCTGGCCCTTCCCCCAACAATTAATTTAATCGGTGAACTGTCCGTAATAATAGCAGCATTTTCATGGTCACACCTAACTATTATCTTAGTAGGCCTTAACACCCTTATCACCGCCCTATATTCCCTATATATACTAATCATAACTCAACGAGGAAAATACACATATCATATCAACAATATCATGCCCCCTTTCACCCGAGAAAATACATTAATAATCATACACCTATTTCCCTTAATCCTACTATCTACCAACCCCAAAGTAATTATAGGAACCATGTACTGTAAATATAGTTTAAACAAAACATTAGATTGTGAGTCTAATAATAGAAGCCCAAAGATTTCTTATTTACCAAGAAAGTA-TGCAAGAACTGCTAACTCATGCCTCCATATATAACAATGTGGCTTTCTT-ACTTTTAAAGGATAGAAGTAATCCATCGGTCTTAGGAACCGAAAA-ATTGGTGCAACTCCAAATAAAAGTAATAAATTTATTTTCATCCTCCATTTTACTATCACTTACACTCTTAATTACCCCATTTATTATTACAACAACTAAAAAATATGAAACACATGCATACCCTTACTACGTAAAAAACTCTATCGCCTGCGCATTTATAACAAGCCTAGTCCCAATGCTCATATTTCTATACACAAATCAAGAAATAATCATTTCCAACTGACATTGAATAACGATTCATACTATCAAATTATGCCTAAGCTT"/>
    </data>

    <map name="Uniform" >beast.base.inference.distribution.Uniform</map>

    <map name="Exponential" >beast.base.inference.distribution.Exponential</map>

    <map name="LogNormal" >beast.base.inference.distribution.LogNormalDistributionModel</map>

    <map name="Normal" >beast.base.inference.distribution.Normal</map>

    <map name="Beta" >beast.base.inference.distribution.Beta</map>

    <map name="Gamma" >beast.base.inference.distribution.Gamma</map>

    <map name="LaplaceDistribution" >beast.base.inference.distribution.LaplaceDistribution</map>

    <map name="prior" >beast.base.inference.distribution.Prior</map>

    <map name="InverseGamma" >beast.base.inference.distribution.InverseGamma</map>

    <map name="OneOnX" >beast.base.inference.distribution.OneOnX</map>

    <run id="mcmc" spec="MCMC" chainLength="1000000">
        <state id="state" spec="State" storeEvery="5000">
            <tree id="Tree.t:tree" spec="beast.base.evolution.tree.Tree" name="stateNode">
                <taxonset id="TaxonSet.noncoding" spec="TaxonSet">
                    <alignment id="noncoding" spec="FilteredAlignment" filter="1,458-659,897-898">
                        <data idref="primate-mtDNA"/>
                    </alignment>
                </taxonset>
            </tree>
            <parameter id="mutationRate.s:noncoding" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
            <parameter id="gammaShape.s:noncoding" spec="parameter.RealParameter" lower="0.1" name="stateNode">1.0</parameter>
            <parameter id="kappa.s:noncoding" spec="parameter.RealParameter" lower="0.0" name="stateNode">2.0</parameter>
            <parameter id="kappa.s:1stpos" spec="parameter.RealParameter" lower="0.0" name="stateNode">2.0</parameter>
            <parameter id="mutationRate.s:1stpos" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
            <parameter id="gammaShape.s:1stpos" spec="parameter.RealParameter" lower="0.1" name="stateNode">1.0</parameter>
            <parameter id="kappa.s:2ndpos" spec="parameter.RealParameter" lower="0.0" name="stateNode">2.0</parameter>
            <parameter id="mutationRate.s:2ndpos" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
            <parameter id="gammaShape.s:2ndpos" spec="parameter.RealParameter" lower="0.1" name="stateNode">1.0</parameter>
            <parameter id="kappa.s:3rdpos" spec="parameter.RealParameter" lower="0.0" name="stateNode">2.0</parameter>
            <parameter id="mutationRate.s:3rdpos" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
            <parameter id="gammaShape.s:3rdpos" spec="parameter.RealParameter" lower="0.1" name="stateNode">1.0</parameter>
            <parameter id="birthRateY.t:tree" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
            <parameter id="clockRate.c:clock" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
        </state>
        <init id="RandomTree.t:3rdpos" spec="RandomTree" estimate="false" initial="@Tree.t:tree">
            <taxa id="3rdpos" spec="FilteredAlignment" data="@primate-mtDNA" filter="4-457\3,662-.\3"/>
            <populationModel id="ConstantPopulation0.t:3rdpos" spec="ConstantPopulation">
                <parameter id="randomPopSize.t:3rdpos" spec="parameter.RealParameter" name="popSize">1.0</parameter>
            </populationModel>
        </init>
        <distribution id="posterior" spec="CompoundDistribution">
            <distribution id="prior" spec="CompoundDistribution">
                <distribution id="CalibratedYuleModel.t:tree" spec="beast.base.evolution.speciation.CalibratedYuleModel" birthRate="@birthRateY.t:tree" tree="@Tree.t:tree"/>
                <prior id="CalibratedYuleBirthRatePrior.t:tree" name="distribution" x="@birthRateY.t:tree">
                    <Gamma id="Gamma.0" name="distr">
                        <parameter id="RealParameter.7" spec="parameter.RealParameter" estimate="false" name="alpha">0.001</parameter>
                        <parameter id="RealParameter.8" spec="parameter.RealParameter" estimate="false" name="beta">1000.0</parameter>
                    </Gamma>
                </prior>
                <prior id="ClockPrior.c:clock" name="distribution" x="@clockRate.c:clock">
                    <Uniform id="Uniform.0" name="distr" upper="Infinity"/>
                </prior>
                <prior id="GammaShapePrior.s:1stpos" name="distribution" x="@gammaShape.s:1stpos">
                    <Exponential id="Exponential.0.1stpos" name="distr">
                        <parameter id="RealParameter.0.1stpos" spec="parameter.RealParameter" estimate="false" name="mean">1.0</parameter>
                    </Exponential>
                </prior>
                <prior id="GammaShapePrior.s:2ndpos" name="distribution" x="@gammaShape.s:2ndpos">
                    <Exponential id="Exponential.0.2ndpos" name="distr">
                        <parameter id="RealParameter.0.2ndpos" spec="parameter.RealParameter" estimate="false" name="mean">1.0</parameter>
                    </Exponential>
                </prior>
                <prior id="GammaShapePrior.s:3rdpos" name="distribution" x="@gammaShape.s:3rdpos">
                    <Exponential id="Exponential.0.3rdpos" name="distr">
                        <parameter id="RealParameter.0.3rdpos" spec="parameter.RealParameter" estimate="false" name="mean">1.0</parameter>
                    </Exponential>
                </prior>
                <prior id="GammaShapePrior.s:noncoding" name="distribution" x="@gammaShape.s:noncoding">
                    <Exponential id="Exponential.0" name="distr">
                        <parameter id="RealParameter.0" spec="parameter.RealParameter" estimate="false" name="mean">1.0</parameter>
                    </Exponential>
                </prior>
                <prior id="KappaPrior.s:1stpos" name="distribution" x="@kappa.s:1stpos">
                    <LogNormal id="LogNormalDistributionModel.0.1stpos" name="distr">
                        <parameter id="RealParameter.4.1stpos" spec="parameter.RealParameter" estimate="false" name="M">1.0</parameter>
                        <parameter id="RealParameter.5.1stpos" spec="parameter.RealParameter" estimate="false" name="S">1.25</parameter>
                    </LogNormal>
                </prior>
                <prior id="KappaPrior.s:2ndpos" name="distribution" x="@kappa.s:2ndpos">
                    <LogNormal id="LogNormalDistributionModel.0.2ndpos" name="distr">
                        <parameter id="RealParameter.4.2ndpos" spec="parameter.RealParameter" estimate="false" name="M">1.0</parameter>
                        <parameter id="RealParameter.5.2ndpos" spec="parameter.RealParameter" estimate="false" name="S">1.25</parameter>
                    </LogNormal>
                </prior>
                <prior id="KappaPrior.s:3rdpos" name="distribution" x="@kappa.s:3rdpos">
                    <LogNormal id="LogNormalDistributionModel.0.3rdpos" name="distr">
                        <parameter id="RealParameter.4.3rdpos" spec="parameter.RealParameter" estimate="false" name="M">1.0</parameter>
                        <parameter id="RealParameter.5.3rdpos" spec="parameter.RealParameter" estimate="false" name="S">1.25</parameter>
                    </LogNormal>
                </prior>
                <prior id="KappaPrior.s:noncoding" name="distribution" x="@kappa.s:noncoding">
                    <LogNormal id="LogNormalDistributionModel.0" name="distr">
                        <parameter id="RealParameter.4" spec="parameter.RealParameter" estimate="false" name="M">1.0</parameter>
                        <parameter id="RealParameter.5" spec="parameter.RealParameter" estimate="false" name="S">1.25</parameter>
                    </LogNormal>
                </prior>
                <distribution id="human-chimp.prior" spec="beast.base.evolution.tree.MRCAPrior" monophyletic="true" tree="@Tree.t:tree">
                    <taxonset id="human-chimp" spec="TaxonSet">
                        <taxon id="Pan" spec="Taxon"/>
                        <taxon id="Homo_sapiens" spec="Taxon"/>
                    </taxonset>
                    <Normal id="Normal.0" name="distr">
                        <parameter id="RealParameter.9" spec="parameter.RealParameter" estimate="false" name="mean">6.0</parameter>
                        <parameter id="RealParameter.10" spec="parameter.RealParameter" estimate="false" name="sigma">0.5</parameter>
                    </Normal>
                </distribution>
            </distribution>
            <distribution id="likelihood" spec="CompoundDistribution" useThreads="true">
                <distribution id="treeLikelihood.noncoding" spec="ThreadedTreeLikelihood" data="@noncoding" tree="@Tree.t:tree">
                    <siteModel id="SiteModel.s:noncoding" spec="SiteModel" gammaCategoryCount="4" mutationRate="@mutationRate.s:noncoding" shape="@gammaShape.s:noncoding">
                        <parameter id="proportionInvariant.s:noncoding" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter>
                        <substModel id="hky.s:noncoding" spec="HKY" kappa="@kappa.s:noncoding">
                            <frequencies id="empiricalFreqs.s:noncoding" spec="Frequencies" data="@noncoding"/>
                        </substModel>
                    </siteModel>
                    <branchRateModel id="StrictClock.c:clock" spec="beast.base.evolution.branchratemodel.StrictClockModel" clock.rate="@clockRate.c:clock"/>
                </distribution>
                <distribution id="treeLikelihood.1stpos" spec="ThreadedTreeLikelihood" branchRateModel="@StrictClock.c:clock" tree="@Tree.t:tree">
                    <data
id="1stpos"
spec="FilteredAlignment"
data="@primate-mtDNA"
filter="2-457\3,660-896\3"/>
                    <siteModel id="SiteModel.s:1stpos" spec="SiteModel" gammaCategoryCount="4" mutationRate="@mutationRate.s:1stpos" shape="@gammaShape.s:1stpos">
                        <parameter id="proportionInvariant.s:1stpos" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter>
                        <substModel id="hky.s:1stpos" spec="HKY" kappa="@kappa.s:1stpos">
                            <frequencies id="empiricalFreqs.s:1stpos" spec="Frequencies" data="@1stpos"/>
                        </substModel>
                    </siteModel>
                </distribution>
                <distribution id="treeLikelihood.2ndpos" spec="ThreadedTreeLikelihood" branchRateModel="@StrictClock.c:clock" tree="@Tree.t:tree">
                    <data
id="2ndpos"
spec="FilteredAlignment"
data="@primate-mtDNA"
filter="3-457\3,661-896\3"/>
                    <siteModel id="SiteModel.s:2ndpos" spec="SiteModel" gammaCategoryCount="4" mutationRate="@mutationRate.s:2ndpos" shape="@gammaShape.s:2ndpos">
                        <parameter id="proportionInvariant.s:2ndpos" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter>
                        <substModel id="hky.s:2ndpos" spec="HKY" kappa="@kappa.s:2ndpos">
                            <frequencies id="empiricalFreqs.s:2ndpos" spec="Frequencies" data="@2ndpos"/>
                        </substModel>
                    </siteModel>
                </distribution>
                <distribution id="treeLikelihood.3rdpos" spec="ThreadedTreeLikelihood" branchRateModel="@StrictClock.c:clock" data="@3rdpos" tree="@Tree.t:tree">
                    <siteModel id="SiteModel.s:3rdpos" spec="SiteModel" gammaCategoryCount="4" mutationRate="@mutationRate.s:3rdpos" shape="@gammaShape.s:3rdpos">
                        <parameter id="proportionInvariant.s:3rdpos" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter>
                        <substModel id="hky.s:3rdpos" spec="HKY" kappa="@kappa.s:3rdpos">
                            <frequencies id="empiricalFreqs.s:3rdpos" spec="Frequencies" data="@3rdpos"/>
                        </substModel>
                    </siteModel>
                </distribution>
            </distribution>
        </distribution>
        <operator id="FixMeanMutationRatesOperator" spec="operator.kernel.BactrianDeltaExchangeOperator" delta="0.75" weight="2.0">
            <parameter idref="mutationRate.s:noncoding"/>
            <parameter idref="mutationRate.s:1stpos"/>
            <parameter idref="mutationRate.s:2ndpos"/>
            <parameter idref="mutationRate.s:3rdpos"/>
            <weightvector id="weightparameter" spec="parameter.IntegerParameter" dimension="4" estimate="false" lower="0" upper="0">205 231 231 231</weightvector>
        </operator>
        <operator id="gammaShapeScaler.s:noncoding" spec="AdaptableOperatorSampler" weight="0.05">
            <parameter idref="gammaShape.s:noncoding"/>
            <operator id="AVMNOperator.noncoding" spec="kernel.AdaptableVarianceMultivariateNormalOperator" allowNonsense="true" beta="0.05" burnin="400" initial="800" weight="0.1">
                <transformations id="AVMNSumTransform.noncoding" spec="operator.kernel.Transform$LogConstrainedSumTransform"/>
                <transformations id="AVMNLogTransform.noncoding" spec="operator.kernel.Transform$LogTransform">
                    <f idref="gammaShape.s:noncoding"/>
                    <f idref="kappa.s:noncoding"/>
                    <f idref="clockRate.c:clock"/>
                </transformations>
                <transformations id="AVMNNoTransform.noncoding" spec="operator.kernel.Transform$NoTransform">
                    <f idref="Tree.t:tree"/>
                </transformations>
            </operator>
            <operator id="gammaShapeScalerX.s:noncoding" spec="kernel.BactrianScaleOperator" parameter="@gammaShape.s:noncoding" scaleFactor="0.5" upper="10.0" weight="0.1"/>
        </operator>
        <operator id="KappaScaler.s:noncoding" spec="AdaptableOperatorSampler" weight="0.05">
            <parameter idref="kappa.s:noncoding"/>
            <operator idref="AVMNOperator.noncoding"/>
            <operator id="KappaScalerX.s:noncoding" spec="kernel.BactrianScaleOperator" parameter="@kappa.s:noncoding" scaleFactor="0.1" upper="10.0" weight="0.1"/>
        </operator>
        <operator id="KappaScaler.s:1stpos" spec="AdaptableOperatorSampler" weight="0.05">
            <parameter idref="kappa.s:1stpos"/>
            <operator id="AVMNOperator.1stpos" spec="kernel.AdaptableVarianceMultivariateNormalOperator" allowNonsense="true" beta="0.05" burnin="400" initial="800" weight="0.1">
                <transformations id="AVMNSumTransform.1stpos" spec="operator.kernel.Transform$LogConstrainedSumTransform"/>
                <transformations id="AVMNLogTransform.1stpos" spec="operator.kernel.Transform$LogTransform">
                    <f idref="gammaShape.s:1stpos"/>
                    <f idref="kappa.s:1stpos"/>
                    <f idref="clockRate.c:clock"/>
                </transformations>
                <transformations id="AVMNNoTransform.1stpos" spec="operator.kernel.Transform$NoTransform">
                    <f idref="Tree.t:tree"/>
                </transformations>
                <kernelDistribution id="KernelDistribution$Bactrian.7" spec="operator.kernel.KernelDistribution$Bactrian"/>
            </operator>
            <operator id="KappaScalerX.s:1stpos" spec="kernel.BactrianScaleOperator" parameter="@kappa.s:1stpos" scaleFactor="0.1" upper="10.0" weight="0.1">
                <kernelDistribution id="KernelDistribution$Bactrian.53" spec="operator.kernel.KernelDistribution$Bactrian"/>
            </operator>
        </operator>
        <operator id="gammaShapeScaler.s:1stpos" spec="AdaptableOperatorSampler" weight="0.05">
            <parameter idref="gammaShape.s:1stpos"/>
            <operator idref="AVMNOperator.1stpos"/>
            <operator id="gammaShapeScalerX.s:1stpos" spec="kernel.BactrianScaleOperator" parameter="@gammaShape.s:1stpos" scaleFactor="0.5" upper="10.0" weight="0.1">
                <kernelDistribution id="KernelDistribution$Bactrian.12" spec="operator.kernel.KernelDistribution$Bactrian"/>
            </operator>
        </operator>
        <operator id="KappaScaler.s:2ndpos" spec="AdaptableOperatorSampler" weight="0.05">
            <parameter idref="kappa.s:2ndpos"/>
            <operator id="AVMNOperator.2ndpos" spec="kernel.AdaptableVarianceMultivariateNormalOperator" allowNonsense="true" beta="0.05" burnin="400" initial="800" kernelDistribution="@KernelDistribution$Bactrian.7" weight="0.1">
                <transformations id="AVMNSumTransform.2ndpos" spec="operator.kernel.Transform$LogConstrainedSumTransform"/>
                <transformations id="AVMNLogTransform.2ndpos" spec="operator.kernel.Transform$LogTransform">
                    <f idref="gammaShape.s:2ndpos"/>
                    <f idref="kappa.s:2ndpos"/>
                    <f idref="clockRate.c:clock"/>
                </transformations>
                <transformations id="AVMNNoTransform.2ndpos" spec="operator.kernel.Transform$NoTransform">
                    <f idref="Tree.t:tree"/>
                </transformations>
            </operator>
            <operator id="KappaScalerX.s:2ndpos" spec="kernel.BactrianScaleOperator" kernelDistribution="@KernelDistribution$Bactrian.53" parameter="@kappa.s:2ndpos" scaleFactor="0.1" upper="10.0" weight="0.1"/>
        </operator>
        <operator id="gammaShapeScaler.s:2ndpos" spec="AdaptableOperatorSampler" weight="0.05">
            <parameter idref="gammaShape.s:2ndpos"/>
            <operator idref="AVMNOperator.2ndpos"/>
            <operator id="gammaShapeScalerX.s:2ndpos" spec="kernel.BactrianScaleOperator" kernelDistribution="@KernelDistribution$Bactrian.12" parameter="@gammaShape.s:2ndpos" scaleFactor="0.5" upper="10.0" weight="0.1"/>
        </operator>
        <operator id="KappaScaler.s:3rdpos" spec="AdaptableOperatorSampler" weight="0.05">
            <parameter idref="kappa.s:3rdpos"/>
            <operator id="AVMNOperator.3rdpos" spec="kernel.AdaptableVarianceMultivariateNormalOperator" allowNonsense="true" beta="0.05" burnin="400" initial="800" kernelDistribution="@KernelDistribution$Bactrian.7" weight="0.1">
                <transformations id="AVMNSumTransform.3rdpos" spec="operator.kernel.Transform$LogConstrainedSumTransform"/>
                <transformations id="AVMNLogTransform.3rdpos" spec="operator.kernel.Transform$LogTransform">
                    <f idref="gammaShape.s:3rdpos"/>
                    <f idref="kappa.s:3rdpos"/>
                    <f idref="clockRate.c:clock"/>
                </transformations>
                <transformations id="AVMNNoTransform.3rdpos" spec="operator.kernel.Transform$NoTransform">
                    <f idref="Tree.t:tree"/>
                </transformations>
            </operator>
            <operator id="KappaScalerX.s:3rdpos" spec="kernel.BactrianScaleOperator" kernelDistribution="@KernelDistribution$Bactrian.53" parameter="@kappa.s:3rdpos" scaleFactor="0.1" upper="10.0" weight="0.1"/>
        </operator>
        <operator id="gammaShapeScaler.s:3rdpos" spec="AdaptableOperatorSampler" weight="0.05">
            <parameter idref="gammaShape.s:3rdpos"/>
            <operator idref="AVMNOperator.3rdpos"/>
            <operator id="gammaShapeScalerX.s:3rdpos" spec="kernel.BactrianScaleOperator" kernelDistribution="@KernelDistribution$Bactrian.12" parameter="@gammaShape.s:3rdpos" scaleFactor="0.5" upper="10.0" weight="0.1"/>
        </operator>
        <operator id="CalibratedYuleModelBICEPSEpochTop.t:tree" spec="EpochFlexOperator" scaleFactor="0.1" tree="@Tree.t:tree" weight="2.0"/>
        <operator id="CalibratedYuleModelBICEPSEpochAll.t:tree" spec="EpochFlexOperator" fromOldestTipOnly="false" scaleFactor="0.1" tree="@Tree.t:tree" weight="2.0"/>
        <operator id="CalibratedYuleModelBICEPSTreeFlex.t:tree" spec="TreeStretchOperator" scaleFactor="0.01" tree="@Tree.t:tree" weight="2.0"/>
        <operator id="CalibratedYuleModelTreeRootScaler.t:tree" spec="kernel.BactrianScaleOperator" rootOnly="true" scaleFactor="0.1" tree="@Tree.t:tree" upper="10.0" weight="3.0"/>
        <operator id="CalibratedYuleModelUniformOperator.t:tree" spec="kernel.BactrianNodeOperator" tree="@Tree.t:tree" weight="30.0"/>
        <operator id="CalibratedYuleModelSubtreeSlide.t:tree" spec="kernel.BactrianSubtreeSlide" tree="@Tree.t:tree" weight="15.0"/>
        <operator id="CalibratedYuleModelNarrow.t:tree" spec="Exchange" tree="@Tree.t:tree" weight="15.0"/>
        <operator id="CalibratedYuleModelWide.t:tree" spec="Exchange" isNarrow="false" tree="@Tree.t:tree" weight="3.0"/>
        <operator id="CalibratedYuleModelWilsonBalding.t:tree" spec="WilsonBalding" tree="@Tree.t:tree" weight="3.0"/>
        <operator id="CalibratedYuleBirthRateScaler.t:tree" spec="kernel.BactrianScaleOperator" parameter="@birthRateY.t:tree" upper="10.0" weight="3.0"/>
        <operator id="StrictClockRateScaler.c:clock" spec="AdaptableOperatorSampler" weight="1.5">
            <parameter idref="clockRate.c:clock"/>
            <operator idref="AVMNOperator.noncoding"/>
            <operator id="StrictClockRateScalerX.c:clock" spec="kernel.BactrianScaleOperator" parameter="@clockRate.c:clock" upper="10.0" weight="3.0"/>
        </operator>
        <operator id="strictClockUpDownOperator.c:clock" spec="AdaptableOperatorSampler" weight="1.5">
            <parameter idref="clockRate.c:clock"/>
            <tree idref="Tree.t:tree"/>
            <operator idref="AVMNOperator.noncoding"/>
            <operator id="strictClockUpDownOperatorX.c:clock" spec="operator.kernel.BactrianUpDownOperator" scaleFactor="0.75" weight="3.0">
                <up idref="clockRate.c:clock"/>
                <down idref="Tree.t:tree"/>
            </operator>
        </operator>
        <logger id="tracelog" spec="Logger" fileName="$(filebase).log" logEvery="200" model="@posterior" sanitiseHeaders="true" sort="smart">
            <log idref="posterior"/>
            <log idref="likelihood"/>
            <log idref="prior"/>
            <log idref="treeLikelihood.3rdpos"/>
            <log idref="treeLikelihood.1stpos"/>
            <log idref="treeLikelihood.noncoding"/>
            <log id="TreeHeight.t:tree" spec="beast.base.evolution.tree.TreeStatLogger" tree="@Tree.t:tree"/>
            <log idref="treeLikelihood.2ndpos"/>
            <log idref="mutationRate.s:noncoding"/>
            <log idref="gammaShape.s:noncoding"/>
            <log idref="kappa.s:noncoding"/>
            <log idref="kappa.s:1stpos"/>
            <log idref="mutationRate.s:1stpos"/>
            <log idref="gammaShape.s:1stpos"/>
            <log idref="kappa.s:2ndpos"/>
            <log idref="mutationRate.s:2ndpos"/>
            <log idref="gammaShape.s:2ndpos"/>
            <log idref="kappa.s:3rdpos"/>
            <log idref="mutationRate.s:3rdpos"/>
            <log idref="gammaShape.s:3rdpos"/>
            <log idref="CalibratedYuleModel.t:tree"/>
            <log idref="birthRateY.t:tree"/>
            <log idref="human-chimp.prior"/>
            <log idref="clockRate.c:clock"/>
        </logger>
        <logger id="screenlog" spec="Logger" logEvery="1000">
            <log idref="posterior"/>
            <log idref="likelihood"/>
            <log idref="prior"/>
        </logger>
        <logger id="treelog.t:tree" spec="Logger" fileName="primate-mtDNA.trees" logEvery="1000" mode="tree">
            <log id="TreeWithMetaDataLogger.t:tree" spec="beast.base.evolution.TreeWithMetaDataLogger" tree="@Tree.t:tree"/>
        </logger>
        <operatorschedule id="OperatorSchedule" spec="OperatorSchedule"/>
    </run>

</beast>
