Command line: /expanse/projects/ngbt/opt/expanse/spades/3.15.5/bin/spades.py	-t	128	-1	/expanse/projects/ngbt/backend/expanse_test_workspace/NGBW-JOB-SPADES_ACCESS-C617AB165DCD45DB9F02BC008CF4F6E4/inputfastq_R1.sub.fq.gz	-2	/expanse/projects/ngbt/backend/expanse_test_workspace/NGBW-JOB-SPADES_ACCESS-C617AB165DCD45DB9F02BC008CF4F6E4/inputfastq_R2.sub.fq.gz	-o	/expanse/projects/ngbt/backend/expanse_test_workspace/NGBW-JOB-SPADES_ACCESS-C617AB165DCD45DB9F02BC008CF4F6E4/spades_output	--checkpoints	last	-k	21,33,55,77,99,127	--isolate	--cov-cutoff	0.9	

System information:
  SPAdes version: 3.15.5
  Python version: 3.8.5
  OS: Linux-4.18.0-348.23.1.el8_5.x86_64-x86_64-with-glibc2.10

Output dir: /expanse/projects/ngbt/backend/expanse_test_workspace/NGBW-JOB-SPADES_ACCESS-C617AB165DCD45DB9F02BC008CF4F6E4/spades_output
Mode: ONLY assembling (without read error correction)
Debug mode is turned OFF

Dataset parameters:
  Isolate mode
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/expanse/projects/ngbt/backend/expanse_test_workspace/NGBW-JOB-SPADES_ACCESS-C617AB165DCD45DB9F02BC008CF4F6E4/inputfastq_R1.sub.fq.gz']
      right reads: ['/expanse/projects/ngbt/backend/expanse_test_workspace/NGBW-JOB-SPADES_ACCESS-C617AB165DCD45DB9F02BC008CF4F6E4/inputfastq_R2.sub.fq.gz']
      interlaced reads: not specified
      single reads: not specified
      merged reads: not specified
Assembly parameters:
  k: [21, 33, 55, 77, 99, 127]
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned ON and threshold is 0.900000
Other parameters:
  Dir for temp files: /expanse/projects/ngbt/backend/expanse_test_workspace/NGBW-JOB-SPADES_ACCESS-C617AB165DCD45DB9F02BC008CF4F6E4/spades_output/tmp
  Threads: 128
  Memory limit (in Gb): 250