cipres_all_12_1_2007.enlEndNote11117<style face="normal" font="default" size="100%">The prior and the posterior in Bayesian phylogenetics</style>cipres_all_12_1_2007.enlEndNote11217<style face="normal" font="default" size="100%">Comparative performance of Bayesian and AIC-based measures of phylogenetic model uncertainty</style>cipres_all_12_1_2007.enlEndNote11317<style face="normal" font="default" size="100%">Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference</style>cipres_all_12_1_2007.enlEndNote11417<style face="normal" font="default" size="100%">Efficient enumeration of phylogenetically informative substrings</style>cipres_all_12_1_2007.enlEndNote11517<style face="normal" font="default" size="100%">Genome identification and classification by short oligo arrays</style>cipres_all_12_1_2007.enlEndNote11717<style face="normal" font="default" size="100%">Lower bounds for maximum parsimony with gene order data</style>cipres_all_12_1_2007.enlEndNote717<style face="normal" font="default" size="100%">Computational biology and high-performance computing </style>cipres_all_12_1_2007.enlEndNote517<style face="normal" font="default" size="100%">An improved, randomized algorithm for parallel selection with an experimental study</style>cipres_all_12_1_2007.enlEndNote1105<style face="normal" font="default" size="100%">High-performance algorithm engineering for large-scale graph problems and computational biology</style>cipres_all_12_1_2007.enlEndNote11810<style face="normal" font="default" size="100%">ExactMP: An efficient parallel exact solver for phylogenetic tree reconstruction using maximum parsimony. </style>cipres_all_12_1_2007.enlEndNote3010<style face="normal" font="default" size="100%">Fast shared memory algorithms for computing the minimum spanning forest of sparse graphs</style>cipres_all_12_1_2007.enlEndNote12017<style face="normal" font="default" size="100%">Fast shared-memory algorithms for graph theoretic problems</style>cipres_all_12_1_2007.enlEndNote1195<style face="normal" font="default" size="100%">Efficient parallel graph algorithms for shared-memory multiprocessors. </style>cipres_all_12_1_2007.enlEndNote12110<style face="normal" font="default" size="100%">On the Architectural Requirements for Efficient Execution of Graph Algorithms</style>cipres_all_12_1_2007.enlEndNote10617<style face="normal" font="default" size="100%">A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPS)</style>cipres_all_12_1_2007.enlEndNote525<style face="normal" font="default" size="100%">Parallel algorithm design for branch and bound</style>cipres_all_12_1_2007.enlEndNote24410<style face="normal" font="default" size="100%">BioPerf: A Benchmark Suite to Evaluate High-Performance Computer Architecture on Bioinformatics Applications</style>cipres_all_12_1_2007.enlEndNote5010<style face="normal" font="default" size="100%">A parallel state assignment algorithm for finite state machines </style>cipres_all_12_1_2007.enlEndNote12210<style face="normal" font="default" size="100%">Design and implementation of the HPCS graph analysis benchmark on symmetric multiprocessors.</style>cipres_all_12_1_2007.enlEndNote12310<style face="normal" font="default" size="100%">Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2</style>cipres_all_12_1_2007.enlEndNote12410<style face="normal" font="default" size="100%">Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks</style>cipres_all_12_1_2007.enlEndNote1255<style face="normal" font="default" size="100%">Design of multithreaded algorithms for combinatorial problems</style>cipres_all_12_1_2007.enlEndNote12610<style face="normal" font="default" size="100%">Computational grand challenges in assembling the tree of life: Problems & solutions</style>cipres_all_12_1_2007.enlEndNote1275<style face="normal" font="default" size="100%">Computational Grand Challenges in Assembling the Tree of Life: Problems & Solutions</style>cipres_all_12_1_2007.enlEndNote12810<style face="normal" font="default" size="100%">A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic</style>cipres_all_12_1_2007.enlEndNote1295<style face="normal" font="default" size="100%">High Performance Algorithms for Phylogeny Reconstruction with Maximum Parsimony</style>cipres_all_12_1_2007.enlEndNote13010<style face="normal" font="default" size="100%">Reconstructing strings from random traces</style>cipres_all_12_1_2007.enlEndNote10017<style face="normal" font="default" size="100%">Dating the dipsacales: Comparing models, genes, and evolutionary implications</style>cipres_all_12_1_2007.enlEndNote8817<style face="normal" font="default" size="100%">Phylogeny and biogeography of Valerianaceae (Dipsacales) with special reference to the South American valerians</style>cipres_all_12_1_2007.enlEndNote1440<style face="normal" font="default" size="100%">Properties of compatibility and consensus sets of phylogenetic trees </style>cipres_all_12_1_2007.enlEndNote2210<style face="normal" font="default" size="100%">Online consensus of phylogenetic trees</style>cipres_all_12_1_2007.enlEndNote24317<style face="normal" font="default" size="100%">The delayed rise of present-day mammals</style>cipres_all_12_1_2007.enlEndNote1315<style face="normal" font="default" size="100%">A model for user-oriented data provenance in pipelined scientific workflows</style>cipres_all_12_1_2007.enlEndNote13210<style face="normal" font="default" size="100%">A compressed format for collections of phylogenetic trees and improved consensus performance.</style>cipres_all_12_1_2007.enlEndNote13317<style face="normal" font="default" size="100%">MAVID: constrained ancestral alignment of multiple sequences</style>cipres_all_12_1_2007.enlEndNote13410<style face="normal" font="default" size="100%">On the tandem duplication-random loss model of genome rearrangement. </style>cipres_all_12_1_2007.enlEndNote13517<style face="normal" font="default" size="100%">HSP90 family of genes in the human genome: insights into their divergence and evolution </style>cipres_all_12_1_2007.enlEndNote13617<style face="normal" font="default" size="100%">Bioinformatics for whole-genome shotgun sequencing of microbial communities</style>cipres_all_12_1_2007.enlEndNote13717<style face="normal" font="default" size="100%">Maximum likelihood Jukes-Cantor triples: Analytical solutions. </style>cipres_all_12_1_2007.enlEndNote13817<style face="normal" font="default" size="100%">Molecular clock forks: Symbolic mathematical analysis.</style>cipres_all_12_1_2007.enlEndNote9917<style face="normal" font="default" size="100%">John H. Beaman - Recipient of the 2004 Asa Gray Award</style>cipres_all_12_1_2007.enlEndNote13910<style face="normal" font="default" size="100%">PRec-I-DCM3: A parallel framework for fast and accurate large scale phylogeny reconstruction. </style>cipres_all_12_1_2007.enlEndNote1405<style face="normal" font="default" size="100%">Towards a model of provenance and user views in scientific workflows.</style>cipres_all_12_1_2007.enlEndNote1055<style face="normal" font="default" size="100%">A user-centric framework for accessing biological sources and tools</style>cipres_all_12_1_2007.enlEndNote810<style face="normal" font="default" size="100%">The Euler tour technique and parallel rooted spanning tree</style>cipres_all_12_1_2007.enlEndNote5110<style face="normal" font="default" size="100%">Lock-free parallel algorithms: an experimental study </style>cipres_all_12_1_2007.enlEndNote14110<style face="normal" font="default" size="100%">An empirical analysis of parallel random permutation algorithms on smps.</style>cipres_all_12_1_2007.enlEndNote14217<style face="normal" font="default" size="100%">Designing irregular parallel algorithms with mutual exclusion and lock-free protocols. </style>cipres_all_12_1_2007.enlEndNote1436<style face="normal" font="default" size="100%">Assembling the Tree of Life</style>cipres_all_12_1_2007.enlEndNote14417<style face="normal" font="default" size="100%">Adaptive evolution of chloroplast genome structure. </style>cipres_all_12_1_2007.enlEndNote1455<style face="normal" font="default" size="100%">Maximal accurate forests from distance matrices. </style>cipres_all_12_1_2007.enlEndNote14610<style face="normal" font="default" size="100%">Optimal Phylogenetic Reconstruction</style>cipres_all_12_1_2007.enlEndNote14710<style face="normal" font="default" size="100%">Efficiently supporting structure queries on phylogenetic trees</style>cipres_all_12_1_2007.enlEndNote9717<style face="normal" font="default" size="100%">Explosive radiation of malpighiales supports a mid-Cretaceous origin of modern tropical rain forests</style>cipres_all_12_1_2007.enlEndNote1485<style face="normal" font="default" size="100%">Comparisons, phylogeny, and teaching evolution</style>cipres_all_12_1_2007.enlEndNote8917<style face="normal" font="default" size="100%">Key innovations, convergence, and success: macroevolutionary lessons from plant phylogeny</style>cipres_all_12_1_2007.enlEndNote15017<style face="normal" font="default" size="100%">Viburnum phylogeny based on chloroplast trnK intron and nuclear ribosomal ITS DNA sequences</style>cipres_all_12_1_2007.enlEndNote14917<style face="normal" font="default" size="100%">Implementing the PhyloCode</style>cipres_all_12_1_2007.enlEndNote1515<style face="normal" font="default" size="100%">Biodiversity inventory: Reflections on preparedness and efficiency</style>cipres_all_12_1_2007.enlEndNote15217<style face="normal" font="default" size="100%">PRec-I-DCM3: A parallel framework for fast and accurate large scale phylogeny reconstruction</style>cipres_all_12_1_2007.enlEndNote15310<style face="normal" font="default" size="100%">Parallel divide-and-conquer phylogeny reconstruction by maximum likelihood. </style>cipres_all_12_1_2007.enlEndNote10817<style face="normal" font="default" size="100%">Reconstruction of large phylogenetic trees: A parallel approach</style>cipres_all_12_1_2007.enlEndNote9517<style face="normal" font="default" size="100%">Genetic diversity in Chihuahuan Desert populations of creosotebush (Zygophyllaceae : Larrea tridentata)</style>cipres_all_12_1_2007.enlEndNote2410<style face="normal" font="default" size="100%">Reversing gene erosion: Reconstructing ancestral bacterial genomes from gene-content and order data</style>cipres_all_12_1_2007.enlEndNote15410<style face="normal" font="default" size="100%">PILER: Identification and classification of repeated genomic elements.</style>cipres_all_12_1_2007.enlEndNote8717<style face="normal" font="default" size="100%">Basal cactus phylogeny: Implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form</style>cipres_all_12_1_2007.enlEndNote2455<style face="normal" font="default" size="100%">Tree construction using singular value decomposition</style>cipres_all_12_1_2007.enl