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The CIPRES Science Gateway V. 3.3

The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface. You can also access these same capabilities programatically with the CIPRES REST API. New! MrBayes plug-in for Geneious. Run MrBayes jobs on CIPRES from within Geneious. New! You can run raxmlGUI jobs using CIPRES!

High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML; MrBayes; BEAST; BEAST2; GARLI; MAFFTExaBayes; DPPDIV; FastTree, jModelTest2, PAUP, ParallelStructure, PartitionFinder2IQ Tree, and Migrate-N. If you need access to PhyloBayes, please inquire.

Serial Codes for Tree Inference:
PAUP* (Inference by Parsimony); Poy (Alignment and Inference);

Serial Codes for Sequence Alignment:

Join the CIPRES Google Group for questions and problems.


You can now access CIPRES from raxmlGUI
January 14, 2019 - 6:48 pm
Geneious Plugin Available for MrBayes on CIPRES
December 17, 2018 - 12:14 pm

Locations of last 1000 users


CIPRES – Cyberinfrastructure for Phylogenetic Research