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The CIPRES Science Gateway V. 3.3

The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface. You can also access these same capabilities programatically with the CIPRES REST API. Geneious Prime USERS! Plugin for running MrBayes, RAxML, and IQTree on CIPRES available. raxmlGUI users, you can run raxmlGUI jobs using CIPRES!

High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML; RAxML-NG; MrBayes; BEAST; BEAST2; GARLI; MAFFTExaBayes; DPPDIV; FastTree, jModelTest2, ModelTest-NG, PAUP, ParallelStructure, PartitionFinder2, Ima3, IQ Tree, Bali-Phy, and Migrate-N. If you need access to PhyloBayes, please inquire.

Serial Codes for Tree Inference:
PAUP* (Inference by Parsimony); Poy (Alignment and Inference);

Serial Codes for Sequence Alignment:

Join the CIPRES Google Group for questions and problems.


CIPRES now supports file sharing via SEEDMELAB
June 17, 2020 - 11:45 am
RAxML-NG and IQ-Tree2 now available on CIPRES
May 27, 2020 - 8:14 am

Locations of last 1000 users


CIPRES – Cyberinfrastructure for Phylogenetic Research