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Parallel tools currently supported by the CIPRES Science Gateway

Tool

Latest
Version

Language Compiler Computer Cores
charged
MPI library Threading Other Software
BEAST 1.10.5 pre Java/C++   Comet 2-84   Pthreads/CUDA BEAGLE 3.1.2
BEAST2 2.6.3 Java/C++   Comet 1-84   Java/CUDA BEAGLE 3.1.2
DPPDiv 1.0 C++ GNU Comet 12   Pthreads  
EPA-NG 0.3.7 C++ GNU Comet 24   OpenMP  
ExaBayes 1.5 C++ GNU Comet 24,48, or 72 OpenMPI    
FastTree 2.1.10 C Intel Comet 3   OpenMP  
GARLI 2.01 C++ Intel Comet 1 to 24 OpenMPI    
G-PhoCS 1.3.2 C Intel Comet 6 to 24   OpenMP  
Ima3 1.11 C++ Intel Comet 1 to 48 MVAPICH2    
IQ-TREE 1.6.10/2.1.1 C++ Clang Comet 6,12, or 24   OpenMP SPRNG; Eigen3
jModelTest2 2.1.10 Java   Comet 24   Java PhyML 3.0
MAFFT 7.427 C Intel Comet 12   Pthreads  
ModelTest-NG 0.1.5 C++ GNU Comet 24   Pthreads PLL
MrBayes 3.2.7a C/C++ Intel Comet 2 to 24 OpenMPI   BEAGLE 3.1.2
Migrate-N 4.2.14 C Intel Comet 1 to 72 MVAPICH2    
ParallelStructure 2.3.4 C + R Intel Comet 12   R  
PartitionFinder2 2.1.1 Python Intel Comet 8   Python RAxML, PhyML
PAUP 4.a165 C Intel Comet 1 or 4   Pthreads  
PhyloBayes 1.7b C++ Intel Comet 48 MVAPICH2    
RAxML 8.2.12 C Intel Comet 12, 24, or 48 OpenMPI Pthreads  
RAxML-NG 0.9.0 C Intel Comet 6-48 OpenMPI Pthreads  

 


CIPRES – Cyberinfrastructure for Phylogenetic Research