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The CIPRES Science Gateway will be unavailable Tuesday, February 21, 2017, 9 AM - 5 PM Pacific time. Jobs that might enter the maintenance period will be held in the queue until maintenance is complete. We regret any inconvenience

The CIPRES Science Gateway V. 3.3

The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface. You can now also access these same capabilities programatically with the CIPRES REST API.

High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML; MrBayes; BEAST; BEAST2; GARLI; MAFFTDPPDIV; FastTree, jModelTest2, PAUP, ParallelStructure, and Migrate-N. If you need access to PhyloBayes, please inquire.

Serial Codes for Tree Inference:
PAUP* (Inference by Parsimony); Poy (Alignment and Inference);

Serial Codes for Sequence Alignment:
ClustalW; Contralign; MUSCLE; PROBCONS; PROBALIGN

Join the CIPRES Google Group for questions and problems.


News

ParallelStructure now available
December 13, 2016 - 10:13 am
Error in Gotoh sequence alignment algorithm
November 13, 2015 - 5:19 am

Locations of last 1000 users





 

CIPRES – Cyberinfrastructure for Phylogenic Research