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The CIPRES Science Gateway will undergo routine maintenance Tuesday, March 3th 2015 at 6 PM, Pacific time. The down time will kill all running jobs, so jobs that enter the maintenance period will be held in the queue. We regret any inconvenience.

The CIPRES Science Gateway V. 3.3

The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface.

High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML; MrBayes; BEAST; BEAST2; GARLI; PhyloBayes MPI; MAFFTDPPDIV; FastTree, and now jModelTest2.

Serial Codes for Tree Inference:
PAUP* (Inference by Parsimony); Poy (Alignment and Inference);

Serial Codes for Sequence Alignment:


MrBayes system error!
February 20, 2015 - 8:32 am
jModelTest2 now available
September 17, 2014 - 11:27 am

Locations of last 1000 users


CIPRES – Cyberinfrastructure for Phylogenic Research