UCSD logo UCSD logo
Home »

The CIPRES Science Gateway V. 3.3

The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface. Through a collaboration with Alexandros Stamatakis and Wayne Pfeiffer, we now offer the fastest hybrid versions of RAxML [pdf] and MrBayes [pdf] currently available, as well as RAxML-Light 1.0.9 (through our partnership with the iPlant collaborative).

High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML (8.0.9); MrBayes (3.1.2 and 3.2.2); GARLI (2.01); BEAST(1.8.0); MAFFT (7.058); PhyloBayes MPI (1.4f); DPPDIV (1.0)

Serial Codes for Tree Inference:
PAUP* (Inference by Parsimony); Poy (Alignment and Inference);

Serial Codes for Sequence Alignment:
ClustalW; Contralign; FSA; MUSCLE; PROBCONS; PROBALIGN


News

Support for MrBayes 3.1.2 will end June 30 2014
April 24, 2014 - 5:19 pm
CIPRES supported 248 new publications Jan - Jun 2014
April 16, 2014 - 5:10 am

Locations of last 1000 users





 

CIPRES – Cyberinfrastructure for Phylogenic Research