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The CIPRES Science Gateway V. 3.3

The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface.

High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML; MrBayes; BEAST; BEAST2; GARLI; PhyloBayes MPI; MAFFTDPPDIV; FastTree, and now jModelTest2.

Serial Codes for Tree Inference:
PAUP* (Inference by Parsimony); Poy (Alignment and Inference);

Serial Codes for Sequence Alignment:


Announcing CIPRES RESTful services! A new way to use CIPRES….
March 20, 2015 - 8:34 pm
Please take the Annual CIPRES User Survey
March 17, 2015 - 9:32 pm

Locations of last 1000 users


CIPRES – Cyberinfrastructure for Phylogenic Research