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The CIPRES Science Gateway V. 3.3

The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface. You can now also access these same capabilities programatically with the CIPRES REST API.

High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML; MrBayes; BEAST; BEAST2; GARLI; MAFFTDPPDIV; FastTree, jModelTest2, PAUP, ParallelStructure, PartitionFinder2, and Migrate-N. If you need access to PhyloBayes, please inquire.

Serial Codes for Tree Inference:
PAUP* (Inference by Parsimony); Poy (Alignment and Inference);

Serial Codes for Sequence Alignment:
ClustalW; Contralign; MUSCLE; PROBCONS; PROBALIGN

Join the CIPRES Google Group for questions and problems.


News

New textbook on Computational Phylogenetics by Tandy Warnow
October 10, 2017 - 6:54 am
CIPRES input file editing now available!
June 01, 2017 - 10:52 am

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CIPRES – Cyberinfrastructure for Phylogenic Research