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Parallel codes currently supported by the CIPRES Science Gateway

Code Version Language Compiler Computer Cores
charged
MPI library Threading Other Software
BEAST 1.10.2 Java   Comet 2-84   Java BEAGLE 2.1
BEAST2 2.5.0 Java   Comet 1-84   Java BEAGLE 2.1
DPPDiv 1.0 C++ GNU Comet 12   Pthreads  
ExaBayes 1.5 C++ GNU Comet 2-24 OpenMPI    
FastTree 2.1.10 C Intel Comet 3   OpenMP  
GARLI 2.01 C++ Intel Comet 1 to 24 OpenMPI    
IQ Tree 1.6.6 C++ GNU Comet 12 or 24   OpenMP SPRNG; Eigen3
jModelTest2 2.1.10 Java   Comet 24   Java PhyML 3.0
MAFFT 7.402 C Intel Comet 12   Pthreads  
ModelTest-NG 0.1.5 C++ GNU Comet 24   Pthreads PLL
MrBayes 3.2.6 C Intel Comet 2-24 MVAPICH2   BEAGLE 2.1
Migrate-N 4.2.14 C Intel Comet 1-72 MVAPICH2    
ParallelStructure 2.3.4 C + R Intel Comet 12   R  
PartitionFinder2 2.1.1 Python Intel Comet 8   Python RAxML, PhyML
PAUP 4.0a152 C Intel Comet 1 or 4   Pthreads  
PhyloBayes 1.7b C++ Intel Comet 48 MVAPICH2    
RAxML 8.2.10 C Intel Comet 12, 24, or 48 OpenMPI Pthreads  

 


CIPRES – Cyberinfrastructure for Phylogenetic Research