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The CIPRES Science Gateway will undergo routine maintenance from 5:00pm-11:00pm, 8/15/2017 that will kill running jobs. Jobs that could enter the maintenance period will be held in the queue until maintenance is complete.

Parallel codes currently supported by the CIPRES Science Gateway

Code Version Language Compiler Computer Cores
charged
MPI library Threading Other Software
BEAST 1.8.4 Java   Comet 2-48   Java BEAGLE 2.1
BEAST2 2.4.5 Java   Comet 1-6   Java BEAGLE 2.1
DPPDiv 1.0 C++ GNU Comet 12   Pthreads  
FastTree 2.1.9 C Intel Comet 3   OpenMP  
GARLI 2.01 C++ Intel Comet 1 to 24 OpenMPI   NCL 2.1.18
jModelTest2 2.1.10 Java   Comet 24   Java PhyML 3.0
MAFFT 7.305 C Intel Comet 12   Pthreads  
MrBayes 3.2.6 C Intel Comet 2-24 MVAPICH2   BEAGLE 2.1
Migrate-N 3.6.11 C Intel Comet 1-72 MVAPICH2    
ParallelStructure 2.3.4 C + R Intel Comet 12   R  
PartitionFinder2 2.1.1 Python Intel Comet 8      
PAUP 4.0a152 C Intel Comet 1 or 4   Pthreads RAxML, PhyML
PhyloBayes 1.7b C++ Intel Comet 48 MVAPICH2    
RAxML 8.2.10 C Intel Comet 12, 24, or 48 OpenMPI Pthreads  

 


CIPRES – Cyberinfrastructure for Phylogenic Research