CIPRES Parallel Codes

Parallel tools currently supported by the CIPRES Science Gateway

Tool	Latest Version	Language	Compiler	Cluster	Cores charged	MPI library	Threading	Other Software
ASTRAL (CPU)	5.15.4	Java/C++	Clang	Expanse	8 - 16		Java
ASTRAL (GPU)	5.15.4	Java/C++	GNU	Expanse	1,2,or 4 GPU*		Java/OpenCL
BAli-Phy	3.6.1	Python/C++	GNU	Expanse	1-6		bash
BEAST 1.8 (CPU)	1.8.4	Java/C++	GNU	Expanse	1 - 3		Java	BEAGLE 4.0.0
BEAST 1.8 (GPU)	1.8.4	Java/C++	GNU	Expanse	1 or 4 GPU*		Java/CUDA	BEAGLE 4.0.0
BEAST 1.10 (CPU)	1.10.5dev	Java/C++	GNU	Expanse	3 - 4		Pthreads	BEAGLE 3.1.2
BEAST 1.10 (GPU)	1.10.5dev	Java/C++	GNU	Expanse	1 GPU*		CUDA	BEAGLE 3.1.2
BEAST2 (CPU)	2.6.6/2.7.6	Java/C++	GNU	Expanse	1 - 64		Java	BEAGLE 4.0.0
BEAST2 (GPU)	2.6.6/2.7.6	Java/C++	GNU	Expanse	1 or 4 GPU*		Java/CUDA	BEAGLE 4.0.0
EPA-ng	0.3.8	C++	GNU	Expanse	24		OpenMP
ExaBayes	1.5.1	C++	Clang	Expanse	24 - 128	OpenMPI
FastTree	2.1.10	C	Intel	Expanse	8 - 32		OpenMP
GARLI	2.1	C++	Clang	Expanse	1 - 50	OpenMPI
G-PhoCS	1.3.2	C	Intel	Expanse	6 - 24		OpenMP
IMa3	1.11	C++	Intel	Expanse	48 - 128	OpenMPI
IQ-TREE	1.6.12, 2.1.2	C++	Clang	Expanse	6 - 128		OpenMP	SPRNG; Eigen3
jModelTest2	2.1.10	Java		Expanse	16 - 32		Java	PhyML 3.0
MAFFT	7.490	C	Clang	Expanse	8 - 32		Pthreads
Migrate-N	4.4.4-5.0.4	C	Clang	Expanse	1 - 128	OpenMPI
ModelTest-NG	0.1.6	C++	GNU	Expanse	22 - 38		Pthreads	PLL
MrBayes	3.2.7a	C/C++	GNU	Expanse	2 - 64	OpenMPI		BEAGLE 3.1.2
Muscle Parallel	5.1	C++	GNU	Expanse	32-128		OpenMP
ParallelStructure	2.3.4	C + R	Intel + GNU	Expanse	1 - 32		R
PAUP	4a168	C	GNU	Expanse	1 - 2		Pthreads
PhyloBayes	1.8c	C++	Intel	Expanse	48 - 96	MVAPICH2
RAxML	8.2.12	C	GNU	Expanse	8 - 128	OpenMPI	Pthreads
RAxML-NG	1.1.0	C++	GNU	Expanse	6 - 128		Pthreads
RevBayes	1.1.1	C++	GNU	Expanse	2 - 64	OpenMPI
StatAlign	3.4	Java		Expanse	1-2	MPJ	Java

 

*Each GPU is charged as 20 cpu cores. So a 4 GPU run will be charged as 4*20=80 cpu cores per hour.

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