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The CIPRES Science Gateway will be unavailable Tuesday, February 21, 2017, 9 AM - 5 PM Pacific time. Jobs that might enter the maintenance period will be held in the queue until maintenance is complete. We regret any inconvenience

Parallel codes currently supported by the CIPRES Science Gateway

Code Version Language Compiler Computer Cores
charged
MPI library Threading Other Software
BEAST 1.8.4 Java   Comet 2-48   Java BEAGLE 2.1
BEAST2 2.4.4 Java   Comet 1-6   Java BEAGLE 2.1
DPPDiv 1.0 C++ GNU Gordon 16   Pthreads  
FastTree 2.1.9 C Intel Comet 3   OpenMP  
GARLI 2.0.1 C++ Intel Comet 1 to 24 OpenMPI   NCL 2.1.18
jModelTest2 2.1.6 Java   Gordon 8   Java PhyML 20120412
MAFFT 7.305 C Intel Gordon 8   Pthreads  
MrBayes 3.2.6 C Intel Gordon 8 or 16 MVAPICH2   BEAGLE 2.1
Migrate-N 3.6.11 C Intel Comet 1-72 MVAPICH2    
ParallelStructure 2.3.4 R Intel Comet 12      
PAUP 4.0b C Intel Comet 1-12   Pthreads  
PhyloBayes 1.5a C++ Intel Gordon 64 MVAPICH2    
RAxML 8.2.9 C Intel Comet 12, 24, or 48 OpenMPI Pthreads  

 


CIPRES – Cyberinfrastructure for Phylogenic Research