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Parallel codes currently supported by the CIPRES Science Gateway

Code Version Language Compiler Computer Cores
charged
MPI library Threading Other Software
BEAST 1.8.4 Java   Comet 2-48   Java BEAGLE 2.1
BEAST2 2.4.5 Java   Comet 1-6   Java BEAGLE 2.1
DPPDiv 1.0 C++ GNU Comet 12   Pthreads  
FastTree 2.1.9 C Intel Comet 3   OpenMP  
GARLI 2.01 C++ Intel Comet 1 to 24 OpenMPI   NCL 2.1.18
jModelTest2 2.1.10 Java   Comet 24   Java PhyML 3.0
MAFFT 7.305 C Intel Comet 12   Pthreads  
MrBayes 3.2.6 C Intel Comet 2-24 MVAPICH2   BEAGLE 2.1
Migrate-N 3.6.11 C Intel Comet 1-72 MVAPICH2    
ParallelStructure 2.3.4 C + R Intel Comet 12   R  
PartitionFinder2 2.1.1 Python Intel Comet 8      
PAUP 4.0a152 C Intel Comet 1 or 4   Pthreads RAxML, PhyML
PhyloBayes 1.7b C++ Intel Comet 48 MVAPICH2    
RAxML 8.2.10 C Intel Comet 12, 24, or 48 OpenMPI Pthreads  

 


CIPRES – Cyberinfrastructure for Phylogenic Research