BlastN is part of a suite of programs provided by NCBI for aligning query sequences against those present in a selected target database. This implementation is specific for the TBAS project, and offers access only to that projects's databases. Please contact us if you have questions about our implementation and use cases.
input.query_ - Primary Input File
vparam.runtime_ - Float - Maximum Hours to Run (click here for help setting this correctly)
vparam.use_epa_ - Switch - User can specify whether or not they are using EPA Evolutionary Placement algorithm)
vparam.nucleotid_db_ - Excl - Sets the database that will be used. Default = 5_8S; allowed values 5_8s, its, nuclsu, nucssu, mitssu, rpb1, rpb2, UNITE_public_tbas, unaligned_its, unaligned_lsu, unaligned_ssu, unaligned_mitssu, unaligned_rpb1, unaligned_rpb2 NOTE: unaligned databases cannot be used when use_epa=1