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The HPC resources at CIPRES will undergo maintenance for 24 hours, Tuesday, 10/25/2016 07:00 AM - midnight Pacific time. All jobs that enter the maintenance period will be held in the queue until maintenance is complete. We regret any inconvenience.

The CIPRES Science Gateway V. 3.3

The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface. You can now also access these same capabilities programatically with the CIPRES REST API.

High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML; MrBayes; BEAST; BEAST2; GARLI; MAFFTDPPDIV; FastTree, jModelTest2, and Migrate-N. If you need access to PhyloBayes, please inquire.

Serial Codes for Tree Inference:
PAUP* (Inference by Parsimony); Poy (Alignment and Inference);

Serial Codes for Sequence Alignment:

Join the CIPRES Google Group for questions and problems.


Error in Gotoh sequence alignment algorithm
November 13, 2015 - 5:19 am
CIPRES Google Group now available
June 13, 2013 - 11:14 am

Locations of last 1000 users


CIPRES – Cyberinfrastructure for Phylogenic Research