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The CIPRES Science Gateway V. 3.1

The CIPRES Science Gateway V. 3.1 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to large computational resources of the NSF TeraGrid through a simple browser interface. The CIPRES Science Gateway provides new hybrid parallel versions of RAxML (7.2.7) and MrBayes (3.1.2), as well as parallel GARLI (1.0) code to insure the fastest possible run times for submitted jobs. Through a collaboration with Alexandros Stamatakis and Wayne Pfeiffer, we now offer the fastest hybrid versions of RAxML [pdf] and MrBayes [pdf] currently available.

Go to CIPRES Science Gateway

 

High Performance Parallel Codes for Large Tree Inference on TeraGrid:

RAxML (7.2.7); MrBayes (3.1.2); GARLI (1.0)

High Performance Parallel Codes for Sequence Alignment on TeraGrid:

MAFFT (6.822)

Serial Codes for Tree Inference:

PAUP* (Parsimony); Poy (Simultaneous Sequence Alignment and Tree Inference).

Serial Codes for Sequence Alignment:

ClustalW, Contralign, FSA, MUSCLE, PROBCONS, PROBALIGN.

Learn more about: Requirements; Limitations; Architecture; Known Issues

CIPRES Portal V 1.15 and CIPRES Portal V 2.2 have now ceased operations.

 

 

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