Divvier

Divvier on XSEDE

Divvier is a program intended for the processing of multiple sequence alignments (MSA) before downstream analysis. It was primarily developed for
phylogenetic inference, but the core concepts might be applicable to any application where statistical evidence of shared ancestry is important. The manual should
provide an overview of the methodology – including its strengths and weaknesses – and how to apply it to your data.

Input files: Divvier accepts as input an aligned fasta file.

Output files:
The table below shows the kinds of results returned by CIPRES Science Gateway:

Input File Names Sample File from a Test
input file (aligned fasta) divvy_infile.afa
   
Sample Output File Type File Name
processed alignment in fasta output.divvy.fas
prior probability files output.divvy.PP
   

 

If you use Divvier here, please cite:

Ali RH, Bogusz M, Whelan S. Identifying Clusters of High Confidence Homologies in Multiple Sequence Alignments. Mol Biol Evol. 2019 Oct 1;36(10):2340-2351. doi: 10.1093/molbev/msz142. PMID: 31209473; PMCID: PMC6933875..

If there is a tool or a feature you need, please let us know.

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