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On the UCSD Supercomputer
Start Your TrialIMa3 allows an investigator to estimate the topology of the phylogenetic tree for the sampled populations or species. IMa3 is based on the older IMa2 and IMa2p programs and uses the same input file format. Nearly all of the options and analyses that were available with IMa2 are present in IMa3, although many of the command line options have changed. If compiled with MPI (MPI_ENABLED is defined during compilation) then IMa3 can be run with multiple heated chains distributed across multiple cores.. Here we offer IQ-TREE on XSEDE resources, which will make the analysis run as fast as possible.
IMa3 Documentation here.
The table below shows the kinds of results returned by CIPRES Science Gateway:
Input File Names | Sample File from a Test |
input file | ima3test3pop4loci_39.u |
Sample Output File Type | File Name |
main output | ima3_test_39.out |
.ti file | ima3_test_39.out.ti |
.mcf file | ima3_test_39.out.mcf.0 |
.mpt file | ima3_test_39.out.mpt |
If you use IMa3 here, please cite:
Hey, J., Chung, Y., Sethuraman, A., Lachance, J., Tishkoff, S., Sousa, V. C., and Wang, Y. (2018) Phylogeny Estimation by Integration over Isolation with Migration Models. Molecular Biology and Evolution 35, 2805-2818.
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