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Start Your TrialMPBOOT is an efficient open-source program to reconstruct maximum parsimony phylogenetic trees for large DNA and protein sequence alignments. Importantly, MPBoot provides a fast approximation for maximum parsimony bootstrap, inspired by a similar methodology that is used for maximum likelihood. (Minh et al., 2013)
Code/manual here.
User support group is here.
Input files:MPBOOT accepts as input a matrix in phylip/relaxed phylip format.
Output files:
The table below shows the kinds of results returned by CIPRES Science Gateway:
Input File Names | Sample File from a Test (large file) |
input file (phylip format) | mpboot.phy |
tree file (phylip/Newick format) | treefile.tre |
Output File Types | File Name |
MPBoot report file: example.phy.mpboot | mpboot.mpboot |
Maximum-parsimony tree file: example.phy.treefile | mpboot.treefile |
Split support values file: example.phy.splits.nex | mpboot.splits.nex |
Consensus tree file: example.phy.contree | mpboot.contree |
Screen log file: example.phy.log | mpboot.log |
If you use MPBOOT here, please cite:
D.T. Hoang, L.S. Vinh, T. Flouri, A. Stamatakis, A. von Haeseler, and B.Q. Minh (2018) MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation. BMC Evol. Biol., 18, 11. MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation. BMC Evol. Biol., 18, 11..
If there is a tool or a feature you need, please let us know.