Home » About » publications2011
 

[2022; 342 articles] [2021; 1795 articles] [2020; 1550 articles] [2019; 1386 articles] [2018; 1263 articles] [2017; 1011 articles] [2016; 928 articles] [2015; 657 articles] [2014; 553 articles] [2013; 363 articles] [2012; 254 articles] [2010; 97 articles] [2009; 61 articles] [2008; 4 articles]

2011 (154 articles)

  1. Draper, I., González-Mancebo, J. M., Werner, O., Patiño, J., and Ros, R. M. (2011) Phylogeographic Relationships between the Mosses Exsertotheca intermedia from Macaronesian Islands and Neckera baetica from Southern Glacial Refugia of the Iberian Peninsula. Annales Botanici Fennici 48, 133-141
  2. Kirischian, N., McArthur, A., Jesuthasan, C., Krattenmacher, B., and Wilson, J. (2011) Phylogenetic and Functional Analysis of the Vertebrate Cytochrome P450 2 Family. J Mol Evol 72, 56-71.DOI: 10.1007/s00239-010-9402-7 http://dx.doi.org/10.1007/s00239-010-9402-7
  3. Pie, MR ; Boeger, WA ; Patella, L ; Vicente, VA ; Ribeiro, RO, Ostrensky, A . (2011) Specific primers for the detection of the black-yeast fungus associated with lethargic crab disease (LCD). Diseases of Aquatic Organisms, v. 94, p. 73-75.  Citações:2|2  
  4. Bueno-Silva, Marlus ; Boeger, Walter A. ; Pie, Marcio R. . Choice matters: Incipient speciation in Gyrodactylus corydori (Monogenoidea: Gyrodactylidae)?. International Journal for Parasitology, p. 657-667, 2011.  Citações:4|6  
  5. Bidegaray-Batista, L. & Arnedo, M. A. 2011. Gone with the plate: the opening of the Western Mediterranean basin drove the diversification of ground-dweller spiders. BMC Evol. Biol. 11: 317.
  6. Doughty P, Kealley L, DONNELLAN SC. (2011). Revision of the Pygmy Spiny-tailed Skinks (Egernia depressa species-group) from western Australia, with descriptions of three new species. Records of the Western Australian Museum 26, 115-137.  
  7. Melo M, Warren BH, Jones PJ (2011) Rapid parallel evolution of aberrant traits in the diversification of the Gulf of Guinea white-eyes (Aves, Zosteropidae). Molecular Ecology 20, 4953-4967.
  8. Skantar, A.M., Handoo, Z.A., Zasada, I.A., Ingham, R.E., Carta, L.K., and Chitwood, D.J. 2011. Morphological and molecular characterization of Globodera populations from Oregon and Idaho. Phytopathology 101:480-491.  
  9. Govindarajulu, R., C. E. Hughes, P. J. Alexander, and C. D. Bailey. 2011a. The complex evolutionary dynamics of ancient and recent polyploidy in Leucaena (Leguminosae; Mimosoideae). American Journal of Botany 98: 2064-2076.
  10. Govindarajulu, R., C. E. Hughes, and C. D. Bailey. 2011b. Phylogenetic and population genetic analyses of diploid Leucaena (Leguminosae; Mimosoideae) reveal cryptic species diversity and patterns of divergent allopatric speciation. American Journal of Botany 98: 2049-2063.
  11. Osborn, K. J., and Rouse, G. W. (2011) Phylogenetics of Acrocirridae and Flabelligeridae (Cirratuliformia, Annelida). Zoologica Scripta 40, 204-219.
  12. Oliveira, C., Avelino, G.S., Abe, K.T., Mariguela, T.C., Benine, R.C., Ortí, G., Vari, R.P., Castro, R.M.C. (2011) Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling BMC Evolutionary Biology, 11:275. DOI: 1471-2148/11/275.
  13. Pei N, Lian J-Y, Erickson DL, Swenson NG, Kress WJ, et al. (2011) Exploring Tree-Habitat Associations in a Chinese Subtropical Forest Plot Using a Molecular Phylogeny Generated from DNA Barcode Loci. PLoS ONE, 6(6): e21273.
  14. Lundberg, J.G., Sullivan, J.P., Hardman, M. (2011) Phylogenetics of the South American catfish family Pimelodidae (Teleostei: Siluriformes) using nuclear and mitochondrial gene sequences. Proceedings of the Academy of Natural Sciences of Philadelphia 161:153-189
  15. Park, J.-K., Sultana, T., Lee, S.-H., Kang, S., Kim, H., Min, G.-S., Eom, K., and Nadler, S. (2011) Monophyly of clade III nematodes is not supported by phylogenetic analysis of complete mitochondrial genome sequences. BMC Genomics 12, 392
  16. Ramos, K. S. 2011. Relações filogenéticas entre as abelhas da subfamília Andreninae com ênfase nas tribos Calliopsini, Protandrenini e Protomeliturgini (Hymenoptera, Apidae) [Phylogenetic relationships of the bee subfamily Andrenini with focus in the tribes Calliopsini, Protadrenini and Protomeliturgini (Hymenoptera, Apidae)]. PhD Thesis, Universidade Federal do Paraná (UFPR), Brazil.
  17. Huang, D., K. Fitzhugh & G.W. Rouse (2011). Inference of phylogenetic relationships within Fabriciidae (Sabellida, Annelida) using molecular and morphological data. Cladistics, 27(4): 356–379. doi:10.1111/j.1096-0031.2010.00343.x
  18. Huang, D., Licuanan, W., Baird, A., and Fukami, H. (2011) Cleaning up the 'Bigmessidae': Molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae. BMC Evolutionary Biology 11, 3
  19. Beck, E., (2011) Comparative phylogeography of four Indo–Pacific scarine labrids. School of Marine & Tropical Biology. James Cook Unversity, Townsville, p. 116.
  20. Cheng S, Kirton LG, Panandam JM, Siraj SS, Ng KK-S, et al. (2011) Evidence for a Higher Number of Species of Odontotermes  (Isoptera) than Currently Known from Peninsular Malaysia from Mitochondrial DNA Phylogenies. PLoS ONE 6(6): e20992. doi:10.1371/journal.pone.0020992
  21. Chen, Z., Schiffman, M., Herrero, R., DeSalle, R., Anastos, K., Segondy, M., Sahasrabuddhe, V., Gravitt, P.E., Hsing, A. and Burk, R.D. (2011) Evolution and taxonomic classification of human papillomavirus 16 (HPV16)-related variant genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67. PLoS ONE 6: e20183.
  22. Edgcomb, V. P., Breglia, S. A., Yubuki, N., Beaudoin, D., Patterson, D. J., Leander, B. S., and Bernhard, J. M. (2011) Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution. ISME J 5, 231-243
  23. Chomnunti, P., Schoch, C., Aguirre-Hudson, B., et al. (2011) Capnodiaceae. Fungal Diversity 51, 103-134.DOI: 10.1007/s13225-011-0145-6
  24. Hash, J.M., B.V., B., and Smith, P.T. (2011) Preliminary use of DNA sequences for Dohrniphora (Diptera: Phoridae) phylogeny and taxonomy. Zootaxa 2991, 13-20.
  25. Nelsen, M., Lücking, R., Mbatchou, J., Andrew, C., Spielmann, A., and Lumbsch, H. (2011) New insights into relationships of lichen-forming Dothideomycetes. Fungal Diversity 51:155-162. DOI: 10.1007/s13225-011-0144-7
  26. Satler, J D (2011) Species trees and species delimitation in the California trapdoor spider genus Aliatypus (Mygalomorphae, Antrodiaetidae). MS Thesis, San Diego State University.
  27. Liu, J.-K., Phookamsak, R., Jones, E., et al. (2011) Astrosphaeriella is polyphyletic, with species in Fissuroma gen. nov., and Neoastrosphaeriella gen. nov. Fungal Diversity 51:135-154. DOI: 10.1007/s13225-011-0142-9
  28. Wall, Katherine M (2011) Microbial diversity in Hawaiian fumaroles. PhD Thesis, San Diego State University.
  29. Pérez-Losada, M., Breinholt, J.W., Porto, P.G., Aira, M., and Domínguez, J. (2011) An Earthworm Riddle: Systematics and Phylogeography of the Spanish Lumbricid Postandrilus. PLoS ONE 6:e28153.DOI: 10.1371/journal.pone.0028153
  30. Fishbein, M., Chuba, D., Ellison, C., Mason-Gamer, R., and Lynch, S.P. (2011) Phylogenetic relationships of Asclepias (Apocynaceae) estimated from non-coding cpDNA sequences. Systematic Botany 36(4):1008-1023.
  31. Franciscoa, S.M., Congiuc, L., von der Heydend, S., and Almadaa, V.C. (2011) Multilocus phylogenetic analysis of the genus Atherina (Pisces: Atherinidae) Molecular Phylogenetics and Evolution. 61(1): 71–78.
  32. Zhou, L., Powell, C.A., Hoffman, M. T., Li, W., Fan, G., Liu, B., Hong, L and Duan, Y. (2011) Diversity and Plasticity of the Intracellular Plant Pathogen and Insect Symbiont “Candidatus Liberibacter asiaticus” as Revealed by Hypervariable Prophage Genes with Intragenic Tandem Repeats. Appl. Environ. Microbiol. 77(18) 6663-6673.
  33. Alström, P., Höhna, S., Gelang, M., Ericson, P.G.P.,and Olsson, U. (2011) Non-monophyly and intricate morphological evolution within the avian family Cettiidae revealed by multilocus analysis of a taxonomically densely sampled dataset. BMC Evolutionary Biology 11:352 doi:10.1186/1471-2148-11-352
  34. Adams, M., Wedderburn, S.D., Unmack, P.J., Hammer, M.P., & Johnson, J.B. (2011) "Congeneric assessment demonstrates the linked genetic histories of two threatened fishes (Atherinidae: Craterocephalus) in Australia's Murray-Darling Basin." Conservation Biology 25: 767-776.
  35. Ballerini, E.S. and Kramer, E.K. (2011) In the light of evolution: A reevaluation of conservation in the CO-FT regulon and its role in photoperiodic regulation of flowering time. Frontiers in Plant Evolution and Development 2:81.
  36. Brites, D., Encinas-Viso, F., Ebert, D., Du Pasquier, L. and Hagg, C. (2011) "Population genetics of duplicated alternatively spliced exons of the Dscam gene in Daphnia and Drosophila." PLoS ONE 6 (12): e27947. doi:10.1371/journal.pone.0027947
  37. Chomnunti, P., Schoch, C., Aguirre-Hudson, B., Ko-Ko, T., Hongsanan, S., Jones, E., Kodsueb, R., Phookamsak, R., Chukeatirote, E., Bahkali, A. and Hyde, K. (2011) "Capnodiaceae." Fungal Diversity. 1-32.
  38. Couvreur, T.L.P., Pirie, M.D., Chatrou, L.W., Saunders, R.M.K., Su, Y.C.F., Richardson, J.E., and Erkens, R.H.J. (2011) "Early evolutionary history of the flowering plant family Annonaceae: steady diversification and boreotropical geodispersal." J. Biogeogr. 38:664-680.  
  39. Crawley, S. S. and Hilu, K. W. (2011)  "Impact of missing data, gene choice, and taxon sampling on phylogenetic reconstruction: the Caryophyllales (angiosperms)." Plant Systematics and Evolution 298(2):297-312. doi:10.1007/s00606-011-0544-x.
  40. Crisp, M.D. and Cook, L.G. (2011) "Cenozoic extinctions account for low diversity of extant gymnosperms compared with angiosperms." New Phytologist 192(4):997-1009.
  41. Crisp, M.D., Burrows, G.E., Cook, L.G., Thornhill, A.H. and Bowman, D.M.J.S. (2011) "Flammable biomes dominated by eucalypts originated at the Cretaceous–Palaeogene boundary." Nature Communications 2:193.
  42. Della Rocca, G., Eyre, C. A., Danti, R. and Garbelotto, M. (2011) "Sequence and Simple-Sequence Repeat Analyses of the Fungal Pathogen Seiridium cardinale Indicate California Is the Most Likely Source of the Cypress Canker Epidemic for the Mediterranean Region." Phytopathology 101:1408-1417.
  43. DiBlasi, E., Morse, S., Mayberry, J., Avila, L., Morando, M. and Dittmar, K. (2011) "New Spiroplasma in parasitic Leptus mites and their Agathemera walking stick hosts from Argentina." Journal of Invertebrate Pathology 107(3):225-228. doi:10.1016/j.jip.2011.05.013
  44. Drew, B.T. and Sytsma, K.J. (2011) "Testing the Monophyly and Placement of Lepechinia in the Tribe Mentheae (Lamiaceae)." Systematic Botany Volume 36(4):1038-1049.
  45. Espíndola, A. and Alvarez, N. (2011) "Comparative phylogeography in a specific and obligate pollination antagonism."   PLoS ONE 6: 12. e28662
  46. Fedosov, A., Watkins, M., Heralde III, F.M., Showers Corneli, P., Concepcion, G.P. and Olivera, B.M. (2011) "Phylogeny of the Genus Turris: Correlating Molecular Markers with Radular Anatomy and Shell Morphology." Molecular Phylogenetics and Evolution 59:263-70.
  47. Geisler, J., McGowen, M., Yang, G. and Gatesy, J.  (2011) "A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea." BMC Evolutionary Biology 11:112-144.
  48. Ghai, R., McMahon. K. D. and Rodriguez-Valera, F. (2011) "Breaking a paradigm: cosmopolitan and abundant freshwater Actinobacteria are low GC". Environmental Microbiology Reports. 4:29-35. doi:10.1111/j.1758-2229.2011.00274.x
  49. Govindarajulu, R., Hughes,  C.E., Alexander, P.J. and Bailey, C. D. (2011) "The complex evolutionary dynamics of ancient and recent polyploidy in Leucaena (Leguminosae; Mimosidae)." American Journal of Botany 98:2064-2076.
  50. Govindarajulu, R., Hughes, C.E. and Bailey, C. D.  (2011) "Phylogenetic and population genetic assessment of diploid Leucaena reveal cryptic species diversity and patterns of allopatric divergent speciation." American Journal of Botany 98:2049-2063.
  51. Gueidan, C., Ruibal, C., De Hoog, G.S. and Schneider, H. (2011) "Rock-inhabiting fungi originated during periods of dry climate in the late Devonian and middle Triassic." Fungal Biology 115(10):987-996.
  52. Gueidan, C., Thüs, H. and Pérez-Ortega, S. (2011) "Phylogenetic position of the brown algae-associated lichenized fungus Verrucaria tavaresiae (Verrucariaceae)." Bryologist 114(3):563-569.
  53. Guzmán, B., Lachance, M.A. and Herrera, C.M.  (2011) "Phylogenetic analysis of the angiosperm-nectarivorous insect-yeast association: have yeast and angiosperm lineages co-diversified?" CONGRESS: 12th European Ecological Federation Congress, Ávila.
  54. Halary, S., Malik, S.-B., Lildhar, L., Slamovits, C.H., Hijri, M. and Corradi, N. (2011) "Conserved meiotic machinery in Glomus spp., a putatively ancient asexual fungal lineage." Genome Biology and Evolution, 3:950-958. doi: 10.1093/gbe/evr089.
  55. Hawlitschek, O., Hendrich L. and Balke, M. (2011) "Molecular phylogeny of the squeak beetles, a family with disjunct Palearctic - Australian range." Molecular Phylogenetics and Evolution, doi:10.1016/j.ympev.2011.09.015.  
  56. Hawlitschek, O., Porch, N., Hendrich, L. and Balke, M. (2011) "Ecological niche modelling and nDNA sequencing support a new, morphologically cryptic beetle species unveiled by DNA barcoding." PloS ONE 6(2): e16662.
  57. He, S. and McMahon, K.D. (2011) "Microbiology of 'Candidatus Accumulibacter' in activated sludge." Microb Biotechnol 4(5):603-19.
  58. Hemery, L.G. (2011) Diversite moleculaire, phylogeographie et phylogenie des Crinoides (Echinodermes) dans un environnement extreme : l'ocean Austral. PhD dissertation of the Museum National d'Histoire Naturelle, Paris, 381pp).
  59. Joseph, L., Toon, A.. Schirtzinger, E.E. and Wright, T.F. (2011) "Molecular systematics of two enigmatic genera Psittacella and Pezoporus illuminate the ecological radiation of Australo-Papuan parrots (Aves: Psittaciformes)." Molecular Phylogenetics and Evolution 59:675-684.
  60. Journal Of Heredity
  61. Justo, A. and Hibbett, D.S. (2011) "Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset." Taxon 60(6):1567-1583.
  62. Kaila, L., Mutanen, M. and Nyman, T. (2011) "Phylogeny of the mega-diverse Gelechioidea (Lepidoptera): adaptations and determinants of success." Molecular Phylogenetics and Evolution 61: 801–809.
  63. Kearns, A. M., Joseph, L., Omland, K. E. and Cook,  L. G.  (2011) "Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: did mangrove habitats maintain genetic connectivity in the Black Butcherbird?" Molecular Ecology 20:5042-5059.
  64. Kiontke, K.C., Félix, M.A., Ailion, M., Rockman, M.V., Braendle, C., Pénigault, J.B. and Fitch, D.H. (2011) "A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruits. BMC Evolutionary Biology 11:339. (http://www.biomedcentral.com/1471-2148/11/339)
  65. Kraus, N.J., Showers Corneli, P., Watkins, M., Bandyopadhyay, P., Seger, J., and Olivera, B.M. (2011) "Against expectation: A short sequence with high signal elucidates cone snail phylogeny." Mol. Phylogenet. Evol. doi:10.1016/j.ympev.2010.11.020
  66. Krüger, M., Walker, C., and Schüßler, A. (2011)  "Acaulospora brasiliensis comb. nov. and Acaulospora alpina (Glomeromycota) from upland Scotland: morphology, molecular phylogeny and DNA based detection in roots."  Mycorrhiza 21: 577-587.
  67. Lawrey, J. D., Diederich, P., Nelsen, M.P., Sikaroodi, M., Gillevet,  P. M., Brand, A. M., and van den Boom, P. (2011) "The obligately lichenicolous genus Lichenoconium represents a novel lineage in the Dothideomycetes." Fungal Biology 115:176-187.
  68. Malik S.-B., Brochu, C.D., Bilic, I., Yuan, J., Hess, M., Logsdon, J.M. Jr. and Carlton, J.M. (2011) "Phylogeny of parasitic Parabasalia and free-living relatives inferred from conventional markers vs. Rpb1, a single-copy gene." Public Library of Science - One, 6:6:e20774, doi:10.1371/journal.pone.0020774.
  69. Meredith, R. R., Janecka, J., Gatesy, J., Ryder, O., Fisher, C., Teeling, E., Goodbla, A., Eizirik, E., Simao, T., Stadler, T., Rabosky, D., Honeycutt, R., Flynn, J.,  Ingram, C., Steiner, C., Williams, T., Robinson, T., Burk-Herrick, A., Westerman, M., Ayoub, N., Springer, M. and Murphy, W. (2011)  "Impacts of the Cretaceous terrestrial revolution and KPg extinction on mammal diversification."  Science 334:521-524.
  70. Mosti, S., Lewka Bandara, N. and Papini, A. (2011) "Further insights and new combinations in Aylostera (Cactaceae) based on molecular and morphological data." Pakistan Journal of Botany 43(6): 2769-2785. IF 2010 0.947
  71. Newton, R. J., Jones, S. E., Eiler, A., McMahon, K. D. and Bertilsson S. (2011) "A guide to the natural history of freshwater lake bacteria." Microbiol. Mol. Biol. Rev. 75(1):14-49.
  72. Nosratinia, S., Shevock, J. R. and Mishler B. D. (2011) "Phylogenetic relationships of Yunnanobryon (Musci: Regmatodontaceae)." The Bryologist 114(3):547-555.
  73. Ortiz-Acevedo, E. (2011) "Molecular Systematics of the butterfly tribe Preponini (Nymphalidae: Charaxinae)." Master's Thesis. Department of Entomology and Nematology. University of Florida.
  74. Raja, H.A., Hirayama, K., Tanaka, K., Miller, A.N. and Shearer, C.A. (2011) "Freshwater Ascomycetes: Two new species of Lindgomyces (Lindgomycetaceae, Pleosporales, Dothideomycetes) from Japan and USA." Mycologia 103:1421–1432.
  75. Raja, H.A., Schoch, C.L. Hustad, V.P., Shearer, C.A. and Miller, A.N. (2011) "Testing the phylogenetic utility of MCM7 in the Ascomycota." Mycokeys 1: doi: 10.3897/mycokeys.1.1966
  76. Roberts, T. E., Lanier, H. C., Sargis, E. J. and Olson, L. E. (2011) "Molecular phylogeny of treeshrews (Mammalia: Scandentia) and the timescale of diversification in Southeast Asia." Molecular Phylogenetics and Evolution 60:358-372.  DOI:10.1016/j.ympev.2011.04.021
  77. Root, H. T. and Nelson, P.R. (2011) “Does Phylogenetic Distance Aid in Detecting Environmental Gradients Related to Species Composition?” Journal of Vegetation Science 22(6): 1143–1148.
  78. Schaefer, H. and Renner, S.S. (2011) "Phylogenetic relationships in the order Cucurbitales and a new classification of the gourd family (Cucurbitaceae)." Taxon 60: 122-138.
  79. Schaefer, H., Carine, M.A., and Rumsey, F.J. (2011) "From European priority species to invasive weed: Marsilea azorica is a misidentified alien." Systematic Botany 36: 845-853.
  80. Schüßler, A., Krüger, M. and Walker, C. (2011)  "Revealing natural relationships among arbuscular mycorrhizal fungi: culture line BEG47 represents Diversispora epigaea, not Glomus versiforme."  PLoS ONE 6(8): e23333.
  81. Sekimoto, S., Rochon, D., Long, J.E., Dee, J.M. and Berbee, M.L. (2011) "A multigene phylogeny of Olpidium and its implications for early fungal evolution." BMC Evolutionary Biology 11:233.
  82. Shulse C., and Allen E. (2011) Widespread occurrence of secondary lipid  biosynthesis in microbial lineages. PLoS ONE 6(5): e20146,  doi:10.1371/journal.pone.0020146.
  83. Shulse, C. and Allen, E. (2011) "Diversity and distribution of microbial long-chain  fatty acid biosynthetic genes in the marine environment." Environ  Microbiol 13(3):684-695.
  84. Sihvonen, P., Mutanen, M., Kaila, L., Brehm, G., Hausmann, A. and Staude, H. S. (2011) "Comprehensive molecular sampling yields a robust phylogeny for geometrid moths (Lepidoptera: Geometridae)." PLoS One. 6: 1-11.
  85. Summerbell, R.C., Gueidan, C., Schroers, H.-J., De Hoog, G.S., Straink, M., Arocha Rosete, Y., Guarro, J. and Scott, J.A. (2011) Acremonium phylogenetic overview and revision of Gliomastix, Sarocladium, and Trichothecium. Studies in Mycology 68: 139-162.
  86. Thomson, M. M., and Fernández-García, A. (2011) "Phylogenetic structure in African HIV-1 subtype C revealed by selective sequential pruning." Virology 415:30-38.
  87. Thüs, H., Muggia, L., Pérez-Ortega, S., Favero-Longo, S.E., Joneson, S., O’Brien, H., Nelsen, M.P., Duque-Thüs, R., Grube, M., Friedl, T., Brodie, J., Andrew, C.J., Lücking, R., Lutzoni, F., Gueidan, C. (2011) "Revisiting photobiont diversity in the lichen family Verrucariaceae (Ascomycota)." European Journal of Phycology 46(4):399-415.
  88. Unmack, P.J., Hammer, M., Adams, M. and Dowling, T.E. (2011) "A phylogenetic analysis of pygmy perches (Teleostei: Percichthyidae) with an assessment of the major historical influences on aquatic biogeography in southern Australia." Systematic Biology 60:797-812.
  89. Untereiner, W.A., Gueidan, C., Orr, M.-J., Diederich, P. (2011) "The phylogenetic position of the lichenicolous ascomycete Capronia peltigerae." Fungal Diversity 49:225-233
  90. Vďačný, P., Bourland, W. A., Orsi, W., Epstein, S. S., and Foissner, W. (2011) "Phylogeny and classification of the Litostomatea (Protista, Ciliophora), with emphasis on free-living taxa and the 18S rRNA gene."   Molecular Phylogenetics and Evolution 59(2):510-522.
  91. Vďačný, P., Orsi, W., Bourland, W.A., Shimano, S., Epstein, S. S. and Foissner, W. (2011) "Morphological and molecular phylogeny of dileptid and and tracheliid ciliates: Resolution at the base of the class Litostomatea (Ciliophora, Rhynchostomatia)."  In: European Journal of Protistology 47(4):295-313.
  92. Whelan, N.V., Geneva, A.J. and Graf, D.L. (2011) "Molecular phylogenetic analysis of tropical freshwater mussels (Mollusca: Bivalvia: Unionoida) resolves the position of Coelatura and supports a monophyletic Unionidae." Molecular Phylogenetics & Evolution 61:504-514.
  93. Wu, H., Schoch, C., Boonmee, S., Bahkali, A., Chomnunti, P. and Hyde, K. (2011) "A reappraisal of Microthyriaceae." Fungal Diversity 51:189-248.
  94. Young N. D., Debellé F., Oldroyd G. E., Geurts R., Cannon S. B., Udvardi M. K., Benedito V. A., Mayer K. F., Gouzy J., Schoof H., Van de Peer Y., Proost S., Cook D. R., Meyers B. C., Spannagl M., Cheung F., De Mita S., Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A. K., Murray J. D., Naoumkina M. A., Rosen B., Silverstein K. A., Tang H., Rombauts S., Zhao P. X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Bergès H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., Deshpande S., Dai X., Doyle J. J., Dudez A. M., Farmer A. D., Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., González A. J., Green P. J., Hallab A., Hartog M., Hua A., Humphray S. J., Jeong D. H., Jing Y., Jöcker A., Kenton S. M., Kim D. J., Klee K., Lai H., Lang C., Lin S., Macmil S. L., Magdelenat G., Matthews L., McCorrison J., Monaghan E. L., Mun J. H., Najar F. Z., Nicholson C., Noirot C., O'Bleness M., Paule C. R., Poulain J., Prion F., Qin B., Qu C., Retzel E. F., Riddle C., Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T., Segurens B., Severin A. J., Sherrier D. J., Shi R., Sims S., Singer S. R., Sinharoy S., Sterck L., Viollet A., Wang B. B., Wang K., Wang M., Wang X., Warfsmann J., Weissenbach J., White D. D., White J. D., Wiley G. B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A., Dénarié J., Dixon R. A., May G. D., Schwartz D. C., Rogers J., Quétier F., Town C. D. and Roe B. A.  (2011) "The Medicago genome provides insight into the evolution of rhizobial symbioses" Nature 480(7378):520-4.
  95. Yun, H.Y., Minnis, A.M., Kim, Y.H., Castlebury, L. and Aime, M.C. (2011) "The rust genus Frommeëlla revisited: a later synonym of Phragmidium after all." Mycologia 103:1451–1463.
  96. Zhai, J., Jeong, D. H., De Paoli, E., Park, S., Rosen, B. D., Li, Y., González, A. J., Yan, Z., Kitto, S. L., Grusak, M. A., Jackson, S. A., Stacey, G., Cook, D. R., Green, P. J., Sherrier, D. J. and Meyers, B. C.  (2011) "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs."  Genes Dev 25(23):2540-53.
  97. Zhang, Y., Crous, P., Schoch, C. and Hyde, K. (2011) "Pleosporales." Fungal Diversity 51:1-221.
  98. Zhang, Y., Crous, P., Schoch, C., Bahkali, A., Guo, L. and Hyde, K. (2011) "A molecular, morphological and ecological re-appraisal of Venturiales, a new order of Dothideomycetes." Fungal Diversity 51:249-277.
  99. Schlüter A, Ruiz-Trillo I, and Pujol A. (2011) Phylogenomic evidence for a myxococcal contribution to the mitochondrial fatty acid beta-oxidation. PLoS One. 2011;6(7):e21989. Epub Jul 7, 2011 .
  100. Kiontke, K.C., Félix, A.M., Ailion, M.,  Rockman, M.V., Braendle, C., Pénigault, J.-B.,  and Fitch, D.H.A. (2011) A phylogeny and molecular barcodes for
    Caenorhabditis, with numerous new species from rotting fruits. BMC Evolutionary Biology 11:339. [pdf]
  101. Christidis, L., Irestedt, M., Rowe, D., Boles, W.E. & Norman, J.A. (2011) Mitochondrial and nuclear DNA phylogenies reveal a complex evolutionary history in the Australasian robins (Passeriformes: Petroicidae). Molecular Phylogenetics and Evolution, 61, 726-738. [abstract]
  102. Munro J.B., Heraty, J.M., Burks, R.A., Hawks, D., Mottern, J., et al. (2011) "A Molecular Phylogeny of the Chalcidoidea (Hymenoptera)." PLoS ONE 6(11):e27023.doi:10.1371/journal.pone.0027023.[pdf]
  103. Fong, J.J. and Fujita, M. K. (2011) Evaluating phylogenetic informativeness and data-type usage for new protein-coding genes across Vertebrata. Molecular Phylogenetics and Evolution 61(2):300-7. Epub 2011 Jul 1. [abstract]
  104. Sharma, B., Guo, C. Kong, H., Kramer, E. M. (2011) "Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution." New Phytologist 191(3): 870–883. [abstract]
  105. Fuselier, L., Shaw, B., Engel, J., von Konrat, M., Costa, D., Devos, N., and Shaw, A.J. (2011) "The status and phylogeography of the liverwort genus Apometzgeria Kuwah (Metzgeriaceae)." The Bryologist 114(1):92-101. [abstract]
  106. Němcová, Y., Eliáš, M., Škaloud, P., Neustupa, J., Hodač, L. (2011) "Jenufa gen. nov., a new genus of coccoid green algae (Chlorophyceae, incertae sedis) previously recorded by environmental sequencing." Journal of Phycology 47(4) 928–938. [abstract]
  107. Storz, J.F., Hoffmann, F.G., and Opazo, J.C. (2011) "Phylogenetic diversification of the globin gene superfamily in chordates." IUBMB Life: Special Issue: XVIth International Conference on Dioxygen Binding and Sensing Proteins (O2BIP) – Part 2 63(5):313–322. [abstract]
  108. Zhang, G.-C. and Zhang, L.-B. (2011) "Impatiens shimianensis sp. nov (Balsaminaceae): A new species from Sichuan, China based on morphological and molecular evidence". Systematic Botany \ 36(3):721-729. [abstract]
  109. Mah, C., and Foltz, D. (2011) "Molecular Phylogeny of the Forcipulatacea (Asteroidea: Echinodermata): Systematics & Biogeography." Zoological Journal of the Linnean Society. 162(3): 646–660. [abstract]
  110. Dawson, M.N, Barber, P.H., González-Guzmán, L.I., Toonen, R.J., Dugan, J.E. and Grosberg, R.K., (2011) "Phylogeography of Emerita analoga (Crustacea, Decapoda, Hippidae), an eastern Pacific Ocean sand crab with long-lived pelagic larvae." J. Biogeogr. 38(8) 1600–1612.[abstract]
  111. Schell, W.A., Lee, A.G., and Aime, M.C. (2011) "A new lineage in Pucciniomycotina: class Tritirachiomycetes, order Tritirachiales, family Tritirachiaceae." Mycologia10-333; Published online: June 3, 2011, doi:10.3852/10-333 [abstract]
  112. Sharanowski, B.J. Dowling, A.P.G., and Sharkey, M.J (2011) "Molecular Systematics of Braconidae (Hymenoptera: Ichneumonoidea): phylogenetic insights from a multi-gene dataset. Systematic Entomology 36(3): 549–572. [abstract]
  113. Zhou X., Xu S, Xu J, Chen B, Zhou K, Yang G.(2011). "Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the Laurasiatherian mammals." Systematic Biology published online September 7, 2011 doi:10.1093/sysbio/syr089   [abstract]
  114. Gräfenhan, T., Schroers, H.-J., Nirenberg, H.I. and Seifert, K.A. (2011) "An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella" Stud Mycol 68(1): 79-113.
  115. Ovrebo, C.L., Lodge, D.J., and Aime, M.C. "A new Cantharocybe from Belize with notes on the type of Cantharocybe gruberi." Mycologia: Apr 11.
  116. Mereditha, R.W., Hekkala, E.R., Amato, G., and Gatesy, J. (2011) "A Phylogenetic Hypothesis for Crocodylus (Crocodylia) Based on Mitochondrial DNA: Evidence for a Trans-Atlantic Voyage from Africa to the New World." Molecular Phylogenetics and Evolution Apr 1. [Epub ahead of print].
  117. Lemaire, B., De Block, P., Van Oevelen, S., Verstraete, B., Smets, E., and Dessein, S (2011). "Identification of the bacterial endosymbionts in leaf nodulating Pavetta species (Rubiaceae)." Int. J. Syst. Evol. Microbiol. Mar 4. [Epub ahead of print].
  118. Andrew, D.R. (2011) "A new view of insect-crustacean relationships II. Inferences from expressed sequence tags and comparisons with neural cladistics." Arthropod Structure and Development Arthropod Struct Dev. Feb 21. [Epub ahead of print].
  119. Bueno-Silva, M., Boeger, W.A., and Pie, M.R. (2011) "Choice matters: Incipient speciation in Gyrodactylus corydori (Monogenoidea: Gyrodactylidae)?" International Journal for Parasitology, Feb 23. [Epub ahead of print].
  120. Aruda, A.M., Baumgartner, M.F., Reitzel, A.M., and Tarrant, A.M. (2011) "Heat shock protein expression during stress and diapause in the marine copepod Calanus finmarchicus." J Insect Phys. Mar 16. [Epub ahead of print].
  121. Silva, J.C., Egan, A., Friedman, R., Munro, J.B., Carlton, J.M., and Hughes A.L. (2011) "Genome sequences reveal divergence times of malaria parasite lineages". Parasitology 138:1–13. doi: 10.1017/S0031182010001575.
  122. Ballerini, E. and Kramer, E. M.(2011) "The control of flowering time in the lower eudicot model Aquilegia." EvoDevo, 2:4.
  123. Lahr, D.J.G., Nguyen, T.B., Barbero, E. and Katz, L.B. (2011) "Evolution of the Actin Gene Family in Testate Lobose Amoebae (Arcellinida) is Characterized by Two Distinct Clades of Paralogs and Recent Independent Expansions." Mol Biol Evol 28(1): 223-236.
  124. Buerki, S., Forest, F., Salamin, N., and Alvarez, N (2011) "Comparative performance of supertree algorithms in large data sets using the soapberry family (Sapindaceae) as a case study." Systematic Biology, 60: 32-44.
  125. Arrigo, N., Buerki, S., Béguin, A., Guadagnuolu, R., and Kozlowski, G. (2011) "Phylogenetic relationships in Baldellia (Alismataceae) inferred from AFLP markers, nuclear and chloroplast DNA sequences." Molecular Phylogenetics and Evolution 58: 33-42.
  126. Seitzman, B.H., Ouimette, A., Mixon, R.L., Hobbie, E.A., and Hibbett, D.S. (2011) Conservation of biotrophy in Hygrophoraceae inferred from combined stable isotope and phylogenetic analyses. Mycologia 103 (2): 280-290. doi: 10.3852/10-195.
  127. Cognato, A. I., Hulcr, J., Dole, S., and Jordal, B. H. (2011) "Phylogeny of haplo-diploid, fungus-growing ambrosia beetles (Coleoptera: Curculionidae: Scolytinae: Xyleborini) inferred from molecular and morphological data." Zoologica Scripta 40 (2) 174-186.
  128. Cavallero, S., Nadler, S.A., Paggi, L., Barros, N.B., D'Amelio, S. (2011) "Molecular characterization and phylogeny of anisakid nematodes from cetaceans from southeastern Atlantic coasts of USA, Gulf of Mexico, and Caribbean Sea." Parasitol Res. 108(4):781-92. Epub 2011 Jan 7.
  129. Gold, J. R., Voelker, G., and Renshaw, M.A. (2011) "Phylogenetic relationships of tropical western Atlantic snappers in Subfamily Lutjaninae (Lutjanidae; Perciformes) inferred from mitochondrial DNA sequences." Biol. J. Linnean Society 102:915-929.
  130. Avendaño, J. E (2011) "Molecular phylogenetics, phylogeography, geographic variation, and species limits in the Chlorospingus ophthalmicus complex (Aves, Emberizidae)." Maters thesis. Universidad de los Andes, Bogotá, Colombia.
  131. Sucgang, R., Kuo, A., Tian, X., Salerno, W., Parikh, A., Feasley, C.L., Dalin, E., Tu, H., Huang, E., Barry, K., Lindquist, E., Shapiro, H., Bruce, D., Schmutz, J., Salamov, A., Fey, P., Gaudet, P., Anjard, C., Madan Babu, M., Basu, S., Bushmanova, Y., van der Wel, H., Katoh-Kurasawa, M., Dinh, C., Coutinho, P.M., Saito, T., Elias, M., Schaap, P., Kay, R.R., Henrissat, B., Eichinger, L., Rivero, F., Putnam, N.H., West, C.M., Loomis, W.F., Chisholm, R., Shaulsky, G., Strassmann, J.E., Queller, D.C., Kuspa, A., and Grigoriev, I. (2011) "Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum." Genome Biology 12:R20.
  132. Vlahou, G., Elias, M., von Kleist-Retzow, J.C., Wiesner, R.J., and Rivero, F. (2011) "Non-metazoan Ras related GTPases of the Miro family are not required for mitochondrial transport: functional analysis of the Dictyostelium discoideum ortholog." European Journal of Cell Biology 90:342–355.
  133. Neustupa, J., Eliáš, M., Škaloud, P., Němcová, Y. and Šejnohová, L. (2011) "Xylochloris irregularis gen. et sp. nov (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga." Phycologia 50: 57-66.
  134. Baker, W. J., Norup, M.V., Clarkson, J.J., Couvreur, T.L.P., Dowe, J.L., Lewis, C.E., Pintaud, J.C., Savolainen, V., Wilmot, T., and Chase, M.W.(2011) "Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae)." Annals of Botany doi:10.1093/aob/mcr020.
  135. Weirauch, C., Forero, D., and Jacobs, D. H. (2011) "On the evolution of raptorial legs - an insect example (Hemiptera: Reduviidae Phymatinae)." Cladistics 27: 138-149.
  136. Martinson, V.G., Minckley, R., Danforth, B., Rueppell, O., Tingek, S., and Moran, N.A. (2011) "A simple and distinct microbiota associated with honey bees and bumble bees." Molecular Ecology, 20, 619-628.
  137. Lapoint, R.T., Gidaya, A., and O’Grady, P.M. (2011) "Phylogenetic relationships in the spoon tarsus subgroup of Hawaiian Drosophila; Conflict and concordance between gene trees." Molecular Phylogenetics and Evolution. 58:492-501.
  138. Mah, C., and Foltz, D. (2011) Molecular phylogeny of the Valvatacea (Asteroidea: Echinodermata). Zoological Journal of the Linnean Society. 161(4) 769-788.
  139. O’Grady, P.M., Lapoint, R.T., Bonacum, J., Lasola, J., Owen, E., Wu, Y., and DeSalle, R. (2011) “Phylogenetic and ecological relationships of the Hawaiian Drosophila inferred by mitochondrial DNA analysis.” Molecular Phylogenetics and Evolution 58:244-256.
  140. Lowenstein, J.H., Osmundson, T.W., Becker, S., Hanner, R., and Stiassny, M.L. (2011) “Incorporating DNA barcodes into a multi-year inventory of the fishes of the hyperdiverse Lower Congo River, with a multi-gene performance assessment of the genus Labeo as a case study.” Mitochondrial DNA. Feb 8. [Epub ahead of print].
  141. Townsend, T.M., Tolley, K.A., Glaw, F., Böhme, W., and Vences, M (2011) “Eastward from Africa: Palaeocurrent-mediated chameleon dispersal to the Seychelles Islands.” Biology Letters 7, 225-228.
  142. Townsend, T.M., Leavitt, D.H.,and Reeder, T.W. (2011)”Intercontinental dispersal by a microendemic burrowing reptile (Dibamidae)”. Proceedings of the Royal Society of London Series B-Biological Sciences.
  143. Moreno-Letelier, A., Olmedo, G., Eguiarte, L.E., Martinez-Castilla, L., and Souza, V. (2011) “Parallel Evolution and Horizontal Gene Transfer of the pst Operon in Firmicutes from Oligotrophic Environments,” International Journal of Evolutionary Biology, vol. 2011, Article ID 781642, 10 pages, (2011) doi:10.4061/2011/781642 http://www.sage-hindawi.com/journals/ijeb/2011/781642/
  144. Mitchell, M. N., Ocamb, C. M., Grunwald, N. J., Mancino, L. E., and Gent, D. H. (2011) "Genetic and Pathogenic Relatedness of Pseudoperonospora cubensis and P. humuli." Phytopathology, 0:ja.
  145. Wong, M.K.S. and Takei, Y.(2011) "Characterization of a native angiotensin from an anciently diverged serine protease inhibitor in lamprey." J Endocrinol 209:127-137.
  146. Komoto, N., Yukuhiro, K., Ueda, K., and Tomita, S (2011) "Exploring the molecular phylogeny of phasmids with whole mitochondrial genome sequences." Mol. Phylogenet. Evol. 58: 43-52.
  147. Funaro, C.F., Kronauer, D.J.C., Moreau, C.S., Goldman-Huertas, B., Pierce, N.E., and Russell, J.A. (2011) "Army ants harbor a host-specific clade of Entomoplasmatales bacteria." Applied and Environmental Microbiology 77: 346-350.
  148. Levy, A., Wirtz, P., Floeter, S.R., Almada, V.C. (2011) "The Lusitania Province as a center of diversification: The phylogeny of the genus Microlipophrys (Pisces: Blenniidae)." Molecular Phylogenetics and Evolution 58: 409–413.
  149. Jackson, K. (2011) "The diversity and activity of sulfate-reducing bacteria in relationship to soil salinity in a drained salt marsh." California State University, Long Beach.
  150. Griffiths, K.E., Trueman, J.W.H., Brown, G.R., and Peakall, R. (2011) "Molecular genetic analysis and ecological evidence reveals multiple cryptic species among thynnine wasp pollinators of sexually deceptive orchids." Molecular Phylogenetics and Evolution 59:195-205.
  151. Bourland, W.A., Vdacny, P., Davis, M.C., and Hampikian, G. (2011) "Morphology, Morphometrics, and Molecular Characterization of Bryophrya gemmea n. sp (Ciliophora, Colpodea): Implications for the Phylogeny and Evolutionary Scenario for the Formation of Oral Ciliature in the Order Colpodida." The Journal of Eukaryotic Microbiology 58: 22-36. 47.
  152. Huhndorf, S. M. and Miller, A.N. (2011) "A molecular re-appraisal of Sordariomycetidae taxa and a new species of Rimaconus from New Zealand." Stud Mycol 68(1): 203-210.
  153. Sharma, B., and Kramer, E.M. (2011) The MADS box gene family of the lower eudicot Aquilegia coerulea E. James. Annals of the Missouri Botanical Garden, in press.
  154. Linnakoski, R. (2011). "Bark beetle-associated fungi Fennoscandia with special emphasis on species of Ophiostoma and Grosmannia. ." Dissertationes Forestales 119. 74 p.
     

CIPRES – Cyberinfrastructure for Phylogenetic Research